View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_low_20 (Length: 237)
Name: NF21428_low_20
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 15568793 - 15568575
Alignment:
| Q |
4 |
tacattccccatattttaacattgagagcgtcataaatttcaatgtgtatcttttaattcatatgtcatatgacttcttaaagaatccaccacaacaaac |
103 |
Q |
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| T |
15568793 |
tacattctccatattttaacaccgagagcgtcataaatttcaatgtatatcttttaattcatatgtcatatgacttcttaaagaatccaccacaacaaac |
15568694 |
T |
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| Q |
104 |
taaacgcacaaaatccttatgggttccgtcacaattaagcttgatccaccccacacgaggaattttccatccaatgaaaatagtgtcccattagtgaata |
203 |
Q |
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| T |
15568693 |
taaatgcacaaaatccttatgggttccgtcacaattaagcttgatccactccacacaaggaatttttcttccaatgaaaatagtgtcccattagttaata |
15568594 |
T |
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| Q |
204 |
tatagaagatgttggatgt |
222 |
Q |
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| T |
15568593 |
tatagaagatgttggatgt |
15568575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 26099498 - 26099426
Alignment:
| Q |
132 |
tcacaattaagcttgatccaccccacacgaggaattttccatccaatgaaaatagtgtcccattagtgaatat |
204 |
Q |
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| T |
26099498 |
tcacaattaatcttgattcacccctctcgaagtcttttccatccaatgaaaatagtgtcacattggtgaatat |
26099426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 29223646 - 29223584
Alignment:
| Q |
128 |
tccgtcacaattaagcttgatccaccccacacgaggaattttccatccaatgaaaatagtgtc |
190 |
Q |
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| T |
29223646 |
tccgtcacaattaagcttaatccacccatcccgaggtattttccagccaataaaaatagtgtc |
29223584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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