View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21428_low_3 (Length: 472)

Name: NF21428_low_3
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21428_low_3
NF21428_low_3
[»] chr3 (7 HSPs)
chr3 (9-453)||(6119003-6119443)
chr3 (9-453)||(6111797-6112235)
chr3 (20-453)||(6081320-6081754)
chr3 (181-345)||(6074714-6074876)
chr3 (208-345)||(6074565-6074700)
chr3 (363-453)||(6067945-6068037)
chr3 (401-450)||(6092211-6092260)
[»] chr7 (1 HSPs)
chr7 (181-240)||(9868228-9868287)
[»] chr6 (1 HSPs)
chr6 (181-240)||(27781678-27781737)
[»] chr2 (2 HSPs)
chr2 (184-329)||(34494113-34494258)
chr2 (181-213)||(19145804-19145836)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 6119003 - 6119443
Alignment:
Q  9 gataatactcagtttgatatggagtcttttattaatggaactcgaataagataaacaatagtaacttcaagctatttggtaagagatagggaagccaggg 108  Q
    ||||||||||||||||||||||||||||  |||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  6119003 gataatactcagtttgatatggagtcttccattaatgggactaggataagataaccaatagtaacttcaagctatttggtaagagatagggaagcca--- 6119099  T
Q  109 ataatgttacnnnnnnngtgacatggctatggggaccttgcgtgttatgctttaattttcgaaaccttaagcctcttaatgaattttacacctttgcata 208  Q
     |||||||||       |||||||||||||||||||||||| || |||||||||||||| || ||||| ||||||||||||||||||||| |||| ||||    
T  6119100 -taatgttacaaaaaacgtgacatggctatggggaccttgcatgatatgctttaattttggagaccttgagcctcttaatgaattttacatcttttcata 6119198  T
Q  209 agtcagaacaatatttcctttcttagcaaagactaatttcatgcatcatacataaaacctcaagtcaatgatggtacaaaggatctcagtccaaaggctc 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6119199 agtcagaacaatatttcctttcttagcaaagagtaatttcatgcatcattcataaaacctcaagtcaatgatggtacagaggatctcagtccaaaggctc 6119298  T
Q  309 aaaccacaatattgacttccacctagtttaccatcatcttaatacttgtgattgttttatctataacgtaagcttcaacaagttccaaagcatttataag 408  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6119299 aaaccacaatattgacttccacctagtttaccatcatcataatacatgtaattgttttatctataacataagcttcaacaagttccaaagcgtttataag 6119398  T
Q  409 tagtaaagagcgttgactggagtccatagttttggcttagtccat 453  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  6119399 tagtaaagagcgttgaccggagtccatagctttggcttagtccat 6119443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 6111797 - 6112235
Alignment:
Q  9 gataatactcagtttgatatggagtcttttattaatggaactcgaataagataaacaatagtaacttcaagctatttggtaagagatagggaagccaggg 108  Q
    ||||||| ||||||||||||||||||||  |||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  6111797 gataataatcagtttgatatggagtcttccattaatgggactaggataagataaccaatagtaacttcaagctatttggtaagagatagggaagccaggc 6111896  T
Q  109 ataatgttacnnnnnnngtgacatggctatggggaccttgcgtgttatgctttaattttcgaaaccttaagcctcttaatgaattttacacctttgcata 208  Q
    ||||||||||       |||||||||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||    
T  6111897 ataatgttacaaaaaacgtgacatggctatggggaccttgcatgttatgctttaattttggagaccttgagtctcttaatgaattttacaccttttcata 6111996  T
Q  209 agtcagaacaatatttcctttcttagcaaagactaatttcatgcatcatacataaaacctcaagtcaatgatggtacaaaggatctcagtccaaaggctc 308  Q
    |||| ||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||||||||||||    
T  6111997 agtccgaacaatgtttcctttcttagcaaaaagtaatttcatgcatcattcataaaacctcaagtcaatgatggtacagaggatc---gtccaaaggctc 6112093  T
Q  309 aaaccacaatattgacttccacctagtttaccatcatcttaatacttgtgattgt-tttatctataacgtaagcttcaacaagttccaaagcatttataa 407  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||     ||||||||||||||||||| |||| ||    
T  6112094 aaaccacaatattgacttccacctagtttacaatcatcttaatacatgggattgtctttatctataac----acttcaacaagttccaaagcgtttacaa 6112189  T
Q  408 gtagtaaagagcgttgactggagtccatagttttggcttagtccat 453  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  6112190 gtagtaaagagcgttgattggagtccatagctttggcttagtccat 6112235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 6081754 - 6081320
Alignment:
Q  20 gtttgatatggagtcttttattaatggaactcgaataagataaacaatagtaacttcaagctatttggtaagagatagggaagccagggataatgttacn 119  Q
    |||||| ||||||||||  | || ||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||| || |||||||| |||     
T  6081754 gtttgagatggagtcttccactagtgggactagaataaggcaagcaatagtaacttcaagctatttggtaagagatagggaagtcatggataatgataca 6081655  T
Q  120 nnnnnngtgacatggctatggggaccttgcgtgttatgctttaattttcgaaaccttaagcctcttaatgaattttacacctttgcataagtcagaacaa 219  Q
          ||||||   |||| | ||||||||||||||| |||||||||| || ||||| ||  |||||||||||||||| ||||| ||| |||||||||||    
T  6081654 aaaaaagtgacacaactatagagaccttgcgtgttatactttaattttggataccttgagtatcttaatgaattttactcctttacattagtcagaacaa 6081555  T
Q  220 tatttcctttcttagcaaagactaatttcatgcatcatacataaaacctcaagtcaatgatggtacaaaggatctcagtccaaaggctcaaaccacaata 319  Q
    | ||||||||||||||||||| |||||||||||||||| ||||||||||  ||| |||||||||||||||||||| || |||||||||||||| |||| |    
T  6081554 tgtttcctttcttagcaaagaataatttcatgcatcattcataaaaccttgagttaatgatggtacaaaggatcttagaccaaaggctcaaactacaaca 6081455  T
Q  320 ttgacttccacctagtttaccatcatcttaatacttgtgattgt-tttatctataacgtaagcttcaacaagttccaaagcatttataagtagtaaagag 418  Q
    ||||||||||| ||||||||| ||||||||||||     ||||| |||||||||||| ||||||||||||||||||||||| |  | ||||||| |||||    
T  6081454 ttgacttccacatagtttaccttcatcttaatacagaccattgtctttatctataacataagcttcaacaagttccaaagcgtcaacaagtagtcaagag 6081355  T
Q  419 cgttgactggagtccatagttttggcttagtccat 453  Q
    |||||| || ||||||||| |||||||||||||||    
T  6081354 cgttgaatgaagtccatagctttggcttagtccat 6081320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 6074876 - 6074714
Alignment:
Q  181 ctcttaatgaattttacacctttgcataagtcagaacaatatttcctttcttagcaaagactaatttcatgcatc-atacataaaacctcaagtcaatga 279  Q
    |||||||| |||||||  ||||| || ||||||||||||| ||||||||||||||||||| |||||| | ||||| ||| || | ||||  ||||||||     
T  6074876 ctcttaataaattttagtccttttcacaagtcagaacaatgtttcctttcttagcaaagagtaattttaggcatcgata-atgagaccttgagtcaatgc 6074778  T
Q  280 tggtacaaaggatctcagtccaaaggctcaaaccacaatattgacttccacctagtttaccatcat 345  Q
    |   ||||| ||||| | || | || |||||||||||| |||||||||||| ||||||||| ||||    
T  6074777 t--aacaaacgatcttaatctagagcctcaaaccacaacattgacttccacatagtttaccttcat 6074714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 345
Target Start/End: Complemental strand, 6074700 - 6074565
Alignment:
Q  208 aagtcagaacaatatttcctttcttagcaaagactaatttcatgcatc-atacataaaacctcaagtcaatgatggtacaaaggatctcagtccaaaggc 306  Q
    ||||||||||||| ||||||||||||||||||| |||||| | ||||| ||| || | ||||  |||||||| |   ||||| ||||| | || | || |    
T  6074700 aagtcagaacaatgtttcctttcttagcaaagagtaattttaggcatcgata-atgagaccttgagtcaatgct--aacaaacgatcttaatctagagcc 6074604  T
Q  307 tcaaaccacaatattgacttccacctagtttaccatcat 345  Q
    ||||||||||| |||||||||||| ||||||||| ||||    
T  6074603 tcaaaccacaacattgacttccacatagtttaccttcat 6074565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 6067945 - 6068037
Alignment:
Q  363 ttttatctataacgtaagcttcaacaagttccaaagcatttataagtagtaaagagc--gttgactggagtccatagttttggcttagtccat 453  Q
    |||| |||||||| |||||||||||||||| |||||  || | ||||||| ||||||  |||||||| ||||||||| |||||| | ||||||    
T  6067945 ttttgtctataacataagcttcaacaagtttcaaagtgttaacaagtagtcaagagcgtgttgactgaagtccatagctttggcatggtccat 6068037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 6092260 - 6092211
Alignment:
Q  401 tttataagtagtaaagagcgttgactggagtccatagttttggcttagtc 450  Q
    |||| |||||||||||||||||||||||||||||||| ||| | ||||||    
T  6092260 tttacaagtagtaaagagcgttgactggagtccatagctttagtttagtc 6092211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 9868228 - 9868287
Alignment:
Q  181 ctcttaatgaattttacacctttgcataagtcagaacaatatttcctttcttagcaaaga 240  Q
    ||||||||||||||||| |  ||||||||||||||||||| ||||||||||||| |||||    
T  9868228 ctcttaatgaattttactcaattgcataagtcagaacaatttttcctttcttagaaaaga 9868287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 27781678 - 27781737
Alignment:
Q  181 ctcttaatgaattttacacctttgcataagtcagaacaatatttcctttcttagcaaaga 240  Q
    ||||||||||||||||  | |||| |||||||| |||||| |||||||||||||||||||    
T  27781678 ctcttaatgaattttattcatttgtataagtcaaaacaatgtttcctttcttagcaaaga 27781737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 34494258 - 34494113
Alignment:
Q  184 ttaatgaattttacacctttgcataagtcagaacaatatttcctttcttagcaaagactaatttcatgcatcatacataaaacctcaagtcaatgatggt 283  Q
    |||||||||||||| ||||||||||||| |||| ||  |||| |||||| |||||||    || ||||||||||  | |||| ||  ||||||||||||     
T  34494258 ttaatgaattttactcctttgcataagtaagaaaaaagtttcatttctttgcaaagatccgttgcatgcatcatcaacaaaatcttgagtcaatgatggc 34494159  T
Q  284 acaaaggatctcagtccaaaggctcaaaccacaatattgacttcca 329  Q
    |||||  |||||| |  | |||||  ||||||||| ||||||||||    
T  34494158 acaaaaaatctcaatttagaggcttgaaccacaatgttgacttcca 34494113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 19145836 - 19145804
Alignment:
Q  181 ctcttaatgaattttacacctttgcataagtca 213  Q
    ||||||||||||||||| |||||||||||||||    
T  19145836 ctcttaatgaattttactcctttgcataagtca 19145804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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