View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21428_low_5 (Length: 441)
Name: NF21428_low_5
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 232 - 423
Target Start/End: Original strand, 13608925 - 13609116
Alignment:
| Q |
232 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608925 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
13609024 |
T |
|
| Q |
332 |
acttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13609025 |
acttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcg |
13609116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 13608694 - 13608867
Alignment:
| Q |
1 |
atgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacctgtttcattgaacgaataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608694 |
atgaaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagtttactaacaaaactttacctgtttcattgaacgaataatt |
13608793 |
T |
|
| Q |
101 |
ttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13608794 |
ttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
13608867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 234 - 423
Target Start/End: Original strand, 31244876 - 31245065
Alignment:
| Q |
234 |
tgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaac |
333 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | ||||| | |
|
|
| T |
31244876 |
tgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattgagtcacaaatc |
31244975 |
T |
|
| Q |
334 |
ttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatgatgatgttcg |
423 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||||| |
|
|
| T |
31244976 |
ttcaactttacctaacgatatagttgggatgcactcacgagtcgaagaattagaaaagcttttgattatggactcagatgatgatgttcg |
31245065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 398
Target Start/End: Complemental strand, 6472799 - 6472633
Alignment:
| Q |
232 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| |||||||||||||||| ||| | ||||||||||||| || |
|
|
| T |
6472799 |
catgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataag |
6472700 |
T |
|
| Q |
332 |
acttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctga |
398 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
6472699 |
actgaaactttaactggtgatatagttgggatgcactcacaagtggaagaattacaaaactttctga |
6472633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 6472951 - 6472890
Alignment:
| Q |
4 |
aaggataagtaagtagtattttctctgtttgccacaag--ctgatcaacacttttaagttta |
63 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
6472951 |
aaggataagtaagtagtattttctatgtttgccgcaagttgtgatcaacacttttaagttta |
6472890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 17599659 - 17599600
Alignment:
| Q |
4 |
aaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
63 |
Q |
| |
|
|||||| ||||||| ||||||||| |||| || ||||| | ||||||||||||||||||| |
|
|
| T |
17599659 |
aaggatcagtaagttgtattttctatgttagcaacaagataatcaacacttttaagttta |
17599600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University