View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21428_low_9 (Length: 398)
Name: NF21428_low_9
Description: NF21428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21428_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 238 - 389
Target Start/End: Original strand, 2305498 - 2305649
Alignment:
| Q |
238 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
337 |
Q |
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| T |
2305498 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
2305597 |
T |
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| Q |
338 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
389 |
Q |
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| T |
2305598 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
2305649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 2305331 - 2305476
Alignment:
| Q |
95 |
gaagtttaaataggtaacggtatccacagaaaaaacaaatttaagattttaaattattttaaaatcaataaggataaaagaatggcatatcattgaatga |
194 |
Q |
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| T |
2305331 |
gaagtttaattaggtaacggtatccacaggaaaaacaaatttaggattttaaattattttaaaatcaataaaaataaaagaatggcatatcattgactga |
2305430 |
T |
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| Q |
195 |
ataaaagttacatactcaaccaaattccatgaatacatctatctat |
240 |
Q |
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| T |
2305431 |
ataaaagttacatactcaaccaaattccatgaatacatctatctat |
2305476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 238 - 389
Target Start/End: Original strand, 2337821 - 2337970
Alignment:
| Q |
238 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctaca-aatcacaacacaacctcgtctaactataatggattttgttcttagc |
336 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
2337821 |
tatatatattaagctaatactcatggcacatctatatccaccaatctcctacacaaacacaatacaacctcatctaactataatggatttggttcttagt |
2337920 |
T |
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| Q |
337 |
aacctaataaactcaacaacaattgcactcctttatttcattattcccctatg |
389 |
Q |
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| T |
2337921 |
agcctaataaacggcacaactattgcactcctttatt---ttattcccctatg |
2337970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 2337687 - 2337741
Alignment:
| Q |
133 |
atttaagattttaaattattttaaaatcaataaggataaaagaatggcatatcat |
187 |
Q |
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| T |
2337687 |
atttaagatttaaaattattttaacatcaataaaaataaaagtatgacatatcat |
2337741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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