View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21429_high_1 (Length: 839)
Name: NF21429_high_1
Description: NF21429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21429_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 11 - 820
Target Start/End: Original strand, 39526586 - 39527393
Alignment:
| Q |
11 |
atcatcatgaacctatacatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtattac |
110 |
Q |
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| T |
39526586 |
atcatcatgaacctataaatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtattac |
39526685 |
T |
|
| Q |
111 |
ttaatctatttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagactctgtcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39526686 |
ttaatctatttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagacactgtcc |
39526785 |
T |
|
| Q |
211 |
tacctttataatattcaaacagaacataaaccaacaaatattttcttgccaannnnnnngaaaaccaaacaagaattatagcaaacatagtatggaaaca |
310 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39526786 |
tacatttataatattcaaacagaacataaaccaacaaatattttcttgccaatttttttgaaaaccaaacaagaattatagcaaacatagtatggaaaca |
39526885 |
T |
|
| Q |
311 |
tctaataaaaaccaggtgactaatgtacaaataaaagtatttgnnnnnnnnttatgtcaagtcagcaaaccagttgatatgtaactatcaaggaaaatgc |
410 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39526886 |
tcgaataaaaaccaggtgtctaatgtacaaataaaagtatttgaaaaaaaattatgtcaagtcagcaaaccagttgatatgtaactatcaaggaaaatgc |
39526985 |
T |
|
| Q |
411 |
tcaatgtcctgactggttgactccctgctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacg |
510 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39526986 |
tcaatgtcctgactggttgactccctactcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacg |
39527085 |
T |
|
| Q |
511 |
tacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgccgca |
610 |
Q |
| |
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|
| T |
39527086 |
tacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgccgca |
39527185 |
T |
|
| Q |
611 |
tagtttgatatnnnnnnnctaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacacaaagagaggtagggactggggagctaact |
710 |
Q |
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| T |
39527186 |
tagtttgatattaaaaaactaagcaaactaattccacaagcaaacagagcatagtgtacaatagaaaacac--agagaggtagggactggggagctaact |
39527283 |
T |
|
| Q |
711 |
ttttcaatcattcagtgcttctctgataaatacttatcataacagtaagacaaatatcaatcttaaagaatgcataataattaatctcaaataataacag |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527284 |
ttttcaatcattcagtgcttctctgataaatacttatcataacagtaagacaaacatcaatcttaaagaatgcataataattaatctcaaataataacag |
39527383 |
T |
|
| Q |
811 |
ttaagtgtaa |
820 |
Q |
| |
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|||||||||| |
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|
| T |
39527384 |
ttaagtgtaa |
39527393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 438 - 551
Target Start/End: Original strand, 37852879 - 37852992
Alignment:
| Q |
438 |
ctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
537 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||| || || ||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
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| T |
37852879 |
ctcaccttttctcgacaagatcagttttgtttccaaccaagacaattataacatcactaccacgttcttgacgcacctcctcaacccacttgttagtgtt |
37852978 |
T |
|
| Q |
538 |
aagaaatgattgcc |
551 |
Q |
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||||||||||||| |
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| T |
37852979 |
cagaaatgattgcc |
37852992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 4583580 - 4583521
Alignment:
| Q |
441 |
accttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctc |
500 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||| |
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| T |
4583580 |
acctcttttcaacgagatcagttttgttcccaacaagaacaataatgacatcactgcctc |
4583521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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