View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21429_low_10 (Length: 251)
Name: NF21429_low_10
Description: NF21429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21429_low_10 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: scaffold0667 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 1177 - 951
Alignment:
| Q |
7 |
gattattcttatcgtaatttggtgatagttcttgttattaaacaaaaccataatgtcgatgccatggtctaaaccctacttctgtgactacttagattat |
106 |
Q |
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| T |
1177 |
gattattcttatcgtaatttggtgatagttcttgttattaaacaaaaccataatgtcgatgccatggtctaaaccctacttctgtgactacttagattat |
1078 |
T |
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| Q |
107 |
aacaactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattcaacagtggttatagctagttctgcgattctaa |
206 |
Q |
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| T |
1077 |
aacaactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattcaacagtggttatagctagttctgcgattctaa |
978 |
T |
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| Q |
207 |
tccttattataatatctggtgatagct |
233 |
Q |
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| T |
977 |
tccttattataatatctggtgatagct |
951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 9317972 - 9317742
Alignment:
| Q |
7 |
gattattcttatcgtaatttggtgatagttc----ttgttattaaacaaaaccataatgtcgatgccatggtctaaaccctactt-ctgtgactacttag |
101 |
Q |
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| T |
9317972 |
gattattcttatcgtaacttggtaatagttcctttttcttattaaaaaaaatcataatgtcgatgccatggtgtaaaagctactttctgtgactacttag |
9317873 |
T |
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| Q |
102 |
attataa------caactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattcaacagtggttatagctagttc |
195 |
Q |
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| T |
9317872 |
attataattatatcaatcacatgtattgtatcggcattctttatctaatttcatttattttgaaattgttttgtatattaaatgtggtgatagctagttc |
9317773 |
T |
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| Q |
196 |
tgcgattctaatccttattataatatctggt |
226 |
Q |
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| T |
9317772 |
tgcgattctgatccttattatcatatctggt |
9317742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 7118124 - 7118227
Alignment:
| Q |
60 |
tgtcgatgccatggtctaaaccctactt-ctgtgactacttagattataacaactatatgtattgtatcggcattctttatataattttatttattttgc |
158 |
Q |
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|||| |||||||||| |||| |||||| ||||| ||| |||| ||||||||| || |||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
7118124 |
tgtcaatgccatggtgcaaacgctactttctgtgcctatttagcttataacaattacatgtattgtatccgcattctttatctaatttcatttattttgt |
7118223 |
T |
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| Q |
159 |
aatt |
162 |
Q |
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|||| |
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| T |
7118224 |
aatt |
7118227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 37460844 - 37460772
Alignment:
| Q |
102 |
attataacaactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattc |
174 |
Q |
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| T |
37460844 |
attacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgttttgtaattc |
37460772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 37460916 - 37460880
Alignment:
| Q |
38 |
ttgttattaaacaaaaccataatgtcgatgccatggt |
74 |
Q |
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| T |
37460916 |
ttgttattaaactaaaccataatgtcaatgccatggt |
37460880 |
T |
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