View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21429_low_11 (Length: 221)
Name: NF21429_low_11
Description: NF21429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21429_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5842543 - 5842730
Alignment:
| Q |
16 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5842543 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcccat |
5842642 |
T |
|
| Q |
116 |
ctgtccaaacaagtttaaaccttgttgagggaaaatgaatacacaacaccttccgttttaaaataagtgtcattctaggttttcttat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5842643 |
ctgtccaaacaagtttaaaccttgttgagggaaaatgaatacacaacaccttccgttttaaaataagtgtcattctaggttttcttat |
5842730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5849253 - 5849447
Alignment:
| Q |
16 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
5849253 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcccat |
5849352 |
T |
|
| Q |
116 |
ctgtccaaacaagtttaaaccttgttgagggaaaatgaatacacaacaccttccgttttaa-------aataagtgtcattctaggttttcttat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
5849353 |
ctgtccaaacaagtttaaaccttgttgagggaaaatgaatacacaacaccttccgttttaaagattagaacaagtgtcattctaggttttcttat |
5849447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 5886843 - 5887021
Alignment:
| Q |
18 |
tatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccatct |
117 |
Q |
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|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |
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| T |
5886843 |
tatcataagaaatgagttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaagtgcttagcaatttgtgcccatct |
5886942 |
T |
|
| Q |
118 |
gtccaaa---ca---agtttaaaccttgttgaggg-aaaatgaatacacaacaccttccgttttaaaataagtgtcatt |
189 |
Q |
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||||||| || |||| ||| ||||||||||| ||||||| || || |||||||||||||||||||||||||| |
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| T |
5886943 |
gtccaaagtccaaacagttcaaatcttgttgagggaaaaatgagtagaccgtcccttccgttttaaaataagtgtcatt |
5887021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 5948190 - 5948316
Alignment:
| Q |
16 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccat |
115 |
Q |
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|
|||| ||| |||||||| ||||||||||||| ||||||||||||||||||| | ||||||||| |||||||| || |||| ||| |||||||| |||||| |
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| T |
5948190 |
aataccatgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcccat |
5948289 |
T |
|
| Q |
116 |
ctgtcc-aaacaagtttaaaccttgtt |
141 |
Q |
| |
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|||||| |||||||| |||| |||||| |
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| T |
5948290 |
ctgtccaaaacaagtgtaaatcttgtt |
5948316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 5983803 - 5983911
Alignment:
| Q |
16 |
aatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccat |
115 |
Q |
| |
|
|||||||| | |||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||| || ||||| || |||||| |
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| T |
5983803 |
aatatcatgacaaaggattttcttctttatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccat |
5983902 |
T |
|
| Q |
116 |
ctgtccaaa |
124 |
Q |
| |
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||||||||| |
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| T |
5983903 |
ctgtccaaa |
5983911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 5920628 - 5920747
Alignment:
| Q |
25 |
agaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccatctgtccaaa |
124 |
Q |
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|||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||| ||| ||||| || ||||| ||||||||| |
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| T |
5920628 |
agaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctgtccaaa |
5920727 |
T |
|
| Q |
125 |
caagtttaaaccttgttgag |
144 |
Q |
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||| |||||| ||| ||||| |
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| T |
5920728 |
caaatttaaatctttttgag |
5920747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 5959307 - 5959393
Alignment:
| Q |
38 |
ttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccatctgtccaaa |
124 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |||||||| | |||| || ||||| || ||||||||||||||| |
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| T |
5959307 |
ttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagcccatctgtccaaa |
5959393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 42788738 - 42788835
Alignment:
| Q |
26 |
gaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtacttggcaatttgtgcccatctgtccaa |
123 |
Q |
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||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||| || || || ||||| |||||||| |
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| T |
42788738 |
gaaagtagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa |
42788835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 34626445 - 34626488
Alignment:
| Q |
47 |
cttgaattccaaaagtttttcacctcattatccgttcttcctgg |
90 |
Q |
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|||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
34626445 |
cttgaattccaaaagtttttaatctcattatccgttctacctgg |
34626488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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