View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21429_low_4 (Length: 304)

Name: NF21429_low_4
Description: NF21429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21429_low_4
NF21429_low_4
[»] chr1 (7 HSPs)
chr1 (15-256)||(48591009-48591250)
chr1 (15-256)||(48600704-48600945)
chr1 (163-260)||(35109729-35109825)
chr1 (174-252)||(10996771-10996849)
chr1 (173-260)||(8281133-8281220)
chr1 (173-245)||(17345733-17345805)
chr1 (173-245)||(50521317-50521389)
[»] chr6 (4 HSPs)
chr6 (173-252)||(1115308-1115387)
chr6 (173-245)||(33721771-33721842)
chr6 (175-257)||(98972-99055)
chr6 (173-242)||(9036093-9036162)
[»] chr2 (4 HSPs)
chr2 (173-260)||(16388259-16388345)
chr2 (173-260)||(16388673-16388759)
chr2 (175-245)||(28770998-28771068)
chr2 (176-244)||(18674621-18674684)
[»] scaffold0076 (1 HSPs)
scaffold0076 (173-245)||(16193-16265)
[»] chr5 (2 HSPs)
chr5 (171-275)||(30899666-30899770)
chr5 (173-242)||(34842415-34842484)
[»] chr8 (4 HSPs)
chr8 (193-273)||(9055022-9055102)
chr8 (193-244)||(5990774-5990825)
chr8 (169-220)||(8863876-8863927)
chr8 (173-244)||(7493283-7493352)
[»] chr4 (5 HSPs)
chr4 (173-251)||(873731-873809)
chr4 (171-217)||(34670937-34670983)
chr4 (219-252)||(8114940-8114973)
chr4 (173-218)||(22660079-22660124)
chr4 (172-245)||(37781672-37781745)
[»] chr7 (3 HSPs)
chr7 (201-242)||(8140952-8140993)
chr7 (173-252)||(5817482-5817559)
chr7 (173-257)||(27984294-27984381)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 48591250 - 48591009
Alignment:
Q  15 gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc 114  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48591250 gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc 48591151  T
Q  115 gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctaga 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48591150 gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttaga 48591051  T
Q  215 tgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtc 256  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  48591050 tgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtc 48591009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 48600945 - 48600704
Alignment:
Q  15 gaggagatacaaatgaaaatgaaccgcagaaacatatataccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaaaatgatgttc 114  Q
    |||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48600945 gaggagatacaaatgaaaatgagccgtagaaacgtatgtaccgtcgaccatgctcagtctaaattagcaaaaacaatatgttaaaatgaatatgatgttc 48600846  T
Q  115 gaactattctttttagggaagtgagtgatgttagaatattttattatataattatatgtgttgtgaattggaacaaataatcacatcaataaaacctaga 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| ||||    
T  48600845 gaactattctttttaggggagtgagtgatgttagaatattttattatataattatatgtgttgtgaattcaaataaataatcacatcaataaaacttaga 48600746  T
Q  215 tgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtc 256  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  48600745 tgtgtgaagtaaaagaaatagtaatcaatgaacaaagttgtc 48600704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 35109825 - 35109729
Alignment:
Q  163 taattatatgtgttgtgaattggaacaaa-taatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 260  Q
    ||||||||| ||| ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| ||| ||||||||||||||||  |||||| |||||||    
T  35109825 taattatatctgtagtgaattcgaacaaaataatcacaccaataaaacttagatgtgtagaggaaaggaagtagtaatcaatg--caaagtagtctcaa 35109729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 10996771 - 10996849
Alignment:
Q  174 gttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 252  Q
    |||||||||| ||||||| ||||||| ||||||||| || || ||| |||||||  ||||||||||||||||| |||||    
T  10996771 gttgtgaattcgaacaaacaatcacaccaataaaacttacatatgtagagtaaagaaagtagtaatcaatgaataaagt 10996849  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 8281133 - 8281220
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 260  Q
    |||||||||||  ||| |||||| | | ||||| ||| ||||||||| || |||| ||| |||||||||||||| ||||| |||||||    
T  8281133 tgttgtgaattcaaactaataataataccaatagaacttagatgtgtagattaaaggaaatagtaatcaatgaataaagtagtctcaa 8281220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 17345805 - 17345733
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||||| | ||||  || |||| |||| ||||  |||||||||||| ||| |||||||||||||||||    
T  17345805 tgttgtgaattcggacaagaaaccacaccaatgaaacaaagatgtgtggagcaaaggaagtagtaatcaatga 17345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 50521389 - 50521317
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaaccta--gatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||||| | |||||  |||||||||||||||  ||  ||||||||||||||| ||||| |||||||||||    
T  50521389 tgttgtgaattcggacaaa--atcacatcaataaaaaataaagatgtgtggagtaaaggaagtggtaatcaatga 50521317  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 1115387 - 1115308
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 252  Q
    ||||||||||| || ||||||||| || ||||||||| ||||| | ||||||||||||||||||||||||||| ||||||    
T  1115387 tgttgtgaatttgagcaaataatcgcaccaataaaacttagatatatggagtaaaagaagtagtaatcaatgagcaaagt 1115308  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 33721842 - 33721771
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||    
T  33721842 tgttgtgaatttgaacaaataatcacatcaataaaacc-agatgtgtggaacaaaggaagtagtaatcgatga 33721771  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 98972 - 99055
Alignment:
Q  175 ttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtct 257  Q
    ||||||||| || ||||||| ||||  ||||||||| || | |||||||||||| ||||||||||||||||| |||||| ||||    
T  98972 ttgtgaattcgagcaaataaatcacgccaataaaacttaaacgtgtggagtaaaggaagtagtaatcaatgagcaaagtagtct 99055  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 9036093 - 9036162
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 242  Q
    ||||||||||| || |||||||| ||| ||||||| | ||||| ||||||| ||| ||||||||||||||    
T  9036093 tgttgtgaatttgatcaaataattacaccaataaatcttagatatgtggagcaaatgaagtagtaatcaa 9036162  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 16388259 - 16388345
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 260  Q
    ||||||||||| ||||||||||||||| | ||||| | ||||||||||||| |||  ||||||||||||||||| ||||| |||||||    
T  16388259 tgttgtgaattcgaacaaataatcacaccgataaa-cttagatgtgtggagcaaagaaagtagtaatcaatgaataaagtagtctcaa 16388345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 16388759 - 16388673
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaa 260  Q
    |||||||||||  |||||||||||||||||||||| | ||||||||||||| ||||  |||||||||||||||  ||||| |||||||    
T  16388759 tgttgtgaattcaaacaaataatcacatcaataaa-cttagatgtgtggagcaaaaatagtagtaatcaatgagtaaagtagtctcaa 16388673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 28771068 - 28770998
Alignment:
Q  175 ttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||| ||||||||||||| ||||||||||  |||| |||||| | ||| |||||||||||||||||    
T  28771068 ttgtgaatttgaacaaataatcatatcaataaaatttagacgtgtggtgcaaatgaagtagtaatcaatga 28770998  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 18674684 - 18674621
Alignment:
Q  176 tgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 244  Q
    ||||||||  ||||||||||||||||||||     |||||||||| ||||||  |||||||||||||||    
T  18674684 tgtgaattcaaacaaataatcacatcaata-----tagatgtgtgaagtaaagaaagtagtaatcaatg 18674621  T

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Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 16265 - 16193
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||||| |||| |||||| ||| ||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  16265 tgttgtgaatttgaactaataattacaccaataaaacttagatgtgtcgagcaaaggaagtagtaatcaatga 16193  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 30899666 - 30899770
Alignment:
Q  171 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacga 270  Q
    |||||||||||||  |||||  || || ||||||||||| |||||||||||||  |||||| ||||||||||||| |||||| | |||||  |||||| |    
T  30899666 tgtgttgtgaattcaaacaataaaacatatcaataaaacttagatgtgtggagctaaagaaatagtaatcaatgagcaaagtagcctcaagcaacaacaa 30899765  T
Q  271 caaca 275  Q
    |||||    
T  30899766 caaca 30899770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 34842415 - 34842484
Alignment:
Q  173 tgttgtgaattggaacaa-ataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaa 242  Q
    ||||||||||| |||||| | ||||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  34842415 tgttgtgaattagaacaataaaatcacaccaataaa-cttagatgtgtggagtaaaggaagtagtaatcaa 34842484  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 9055102 - 9055022
Alignment:
Q  193 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagttgtctcaataaacaacgacaa 273  Q
    |||||||||||| ||||   ||||||||||||||| |||||| ||||||||| | ||||| ||||||| ||||||| ||||    
T  9055102 aatcacatcaatgaaacaatgatgtgtggagtaaaggaagtactaatcaatggataaagtagtctcaaaaaacaacaacaa 9055022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 5990825 - 5990774
Alignment:
Q  193 aatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 244  Q
    |||||||||||||||||  ||||||| |||| ||| ||||||||||||||||    
T  5990825 aatcacatcaataaaacaaagatgtgcggagcaaaggaagtagtaatcaatg 5990774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 8863927 - 8863876
Alignment:
Q  169 tatgtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtg 220  Q
    |||||| |||||||| ||||||||||||||| ||||||||| || |||||||    
T  8863927 tatgtgctgtgaattcgaacaaataatcacaccaataaaacttaaatgtgtg 8863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 7493352 - 7493283
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatg 244  Q
    ||||||||||| | |||||  |||||| |||||||||   ||||||||||| ||| ||||||||||||||||    
T  7493352 tgttgtgaattcggacaaa--atcacaccaataaaactatgatgtgtggagcaaaggaagtagtaatcaatg 7493283  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 873809 - 873731
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaag 251  Q
    |||||||||||  |||||||||| ||| ||||||||| ||||||| | ||||||  ||||| ||||||||||| |||||    
T  873809 tgttgtgaatttaaacaaataattacaccaataaaacttagatgtatagagtaatggaagttgtaatcaatgagcaaag 873731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 34670983 - 34670937
Alignment:
Q  171 tgtgttgtgaattggaacaaataatcacatcaataaaacctagatgt 217  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||    
T  34670983 tgtgttgtgaattcgaacaaataatcacaccaataaaatttagatgt 34670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 8114973 - 8114940
Alignment:
Q  219 tggagtaaaagaagtagtaatcaatgaacaaagt 252  Q
    ||||||||||||||||||||||||||| ||||||    
T  8114973 tggagtaaaagaagtagtaatcaatgaccaaagt 8114940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 22660124 - 22660079
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtg 218  Q
    ||||||||||| ||||||||||||||| |||| |||| ||||||||    
T  22660124 tgttgtgaattcgaacaaataatcacaccaatgaaacttagatgtg 22660079  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 37781672 - 37781745
Alignment:
Q  172 gtgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatga 245  Q
    ||||||||||||  |||||||||| | |  |||||||| |||| |||||||| |||||||||||| || |||||    
T  37781672 gtgttgtgaattcaaacaaataattataataataaaacttagaagtgtggagcaaaagaagtagtcattaatga 37781745  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 8140993 - 8140952
Alignment:
Q  201 caataaaacctagatgtgtggagtaaaagaagtagtaatcaa 242  Q
    |||||||||  |||||||||||| ||||||||||||||||||    
T  8140993 caataaaactaagatgtgtggagcaaaagaagtagtaatcaa 8140952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 5817559 - 5817482
Alignment:
Q  173 tgttgtgaattggaacaaataatcacatcaataaaacctagatgtgtggagtaaaagaagtagtaatcaatgaacaaagt 252  Q
    ||||||||||| | |||||  ||||||||||||||||  ||||||||| || |||  ||||| ||||||||| |||||||    
T  5817559 tgttgtgaattcgtacaaa--atcacatcaataaaacaaagatgtgtgaagcaaagtaagtattaatcaatggacaaagt 5817482  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 27984294 - 27984381
Alignment:
Q  173 tgttgtgaattggaacaaataa-tcacatcaataaaacctagatgtgtggagtaaaagaagtag--taatcaatgaacaaagttgtct 257  Q
    |||||||||||  ||||||||| ||||||||||||||| || |||| ||||| ||| ||| |||  ||||||||||| ||||| ||||    
T  27984294 tgttgtgaattcaaacaaataaatcacatcaataaaacttatatgtttggagcaaaggaattagtataatcaatgaataaagtagtct 27984381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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