View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21429_low_7 (Length: 257)
Name: NF21429_low_7
Description: NF21429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21429_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 51277580 - 51277350
Alignment:
| Q |
13 |
gagaggacagcattcacggtgaaaatggttgggcggcaattggaataaatggagtggcgtgtgtagagtgcagcttcgtcgagatcgtttttgctgatta |
112 |
Q |
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| T |
51277580 |
gagaggacagcgttgacggtgaaaatggttgggcggcaattggaataaatggagtggcgtgtgtagagtgcagcttcgtcgagatcgtttttgctgatta |
51277481 |
T |
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| Q |
113 |
aggttagaatagt-ttgtgaaggttgacacggttacccgttaaagcggaggcgcgttcggggagtttagggttactggggttgagataatagggtggaga |
211 |
Q |
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| T |
51277480 |
aggttagaatagtgttgtgaaggttgacacggttacccgttaaagcggaggcgcgttcggggagtttagggttactggggttgagataatagggtggaga |
51277381 |
T |
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| Q |
212 |
ttgtgatttagggtatgcattgggtgattgt |
242 |
Q |
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| T |
51277380 |
atgtgatttagggtatgcattgggtgattgt |
51277350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 41617425 - 41617196
Alignment:
| Q |
14 |
agaggacagcattcacggtgaaaatggttgggcggcaattggaataaatggagtggcgtgtgtagagtgcagcttcgtcgagatcgtttttgctgattaa |
113 |
Q |
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| T |
41617425 |
agaggacagcgttgatggtgaagatggttgggcggcaattggaataaatggagtggcgcgtgtacagtgcggcttcatcgagatcattttggcggattag |
41617326 |
T |
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| Q |
114 |
ggttagaatagt-ttgtgaaggttgacacggttacccgttaaagcggaggcgcgttcggggagtttagggttactggggttgagataatagggtggagat |
212 |
Q |
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| T |
41617325 |
ggttagaatagtgttgtgaaggttgacacggttaccggttaacgcagaagcgtgttcggggagtttagggtcagtggggttgagatagtagggtggggat |
41617226 |
T |
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| Q |
213 |
tgtgatttagggtatgcattgggtgattgt |
242 |
Q |
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| T |
41617225 |
tgtgatttagggtttggattgggtgattgt |
41617196 |
T |
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