View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2142_high_1 (Length: 582)

Name: NF2142_high_1
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2142_high_1
NF2142_high_1
[»] chr2 (20 HSPs)
chr2 (40-571)||(37092140-37092657)
chr2 (472-535)||(17981594-17981657)
chr2 (464-545)||(5394485-5394566)
chr2 (464-545)||(37179972-37180053)
chr2 (464-528)||(25423833-25423897)
chr2 (464-537)||(31579208-31579281)
chr2 (472-537)||(42745095-42745160)
chr2 (472-545)||(14551571-14551644)
chr2 (462-524)||(7020352-7020414)
chr2 (464-526)||(9438126-9438188)
chr2 (470-545)||(17655756-17655833)
chr2 (464-535)||(18105344-18105414)
chr2 (462-528)||(13835445-13835511)
chr2 (462-504)||(14121894-14121936)
chr2 (473-528)||(1682120-1682175)
chr2 (463-525)||(3562181-3562243)
chr2 (478-528)||(14412824-14412874)
chr2 (467-513)||(39401072-39401118)
chr2 (475-528)||(38372982-38373035)
chr2 (470-526)||(39562260-39562316)
[»] chr8 (15 HSPs)
chr8 (467-545)||(2744025-2744103)
chr8 (464-545)||(4124995-4125076)
chr8 (464-545)||(7839224-7839305)
chr8 (462-545)||(19715696-19715780)
chr8 (464-545)||(13468716-13468797)
chr8 (464-545)||(30936093-30936174)
chr8 (478-539)||(39086855-39086916)
chr8 (470-524)||(12958077-12958131)
chr8 (470-545)||(8521793-8521867)
chr8 (464-505)||(30056012-30056053)
chr8 (463-528)||(40320184-40320249)
chr8 (466-537)||(13005657-13005728)
chr8 (470-513)||(36994503-36994546)
chr8 (462-509)||(24988586-24988633)
chr8 (464-505)||(15683018-15683059)
[»] chr4 (25 HSPs)
chr4 (464-545)||(31307037-31307118)
chr4 (277-410)||(17345507-17345641)
chr4 (277-408)||(17138878-17139010)
chr4 (82-194)||(17139161-17139270)
chr4 (82-194)||(17345229-17345338)
chr4 (462-545)||(9012357-9012440)
chr4 (463-545)||(35972431-35972513)
chr4 (464-537)||(51626285-51626358)
chr4 (464-528)||(38766178-38766242)
chr4 (464-545)||(46016238-46016319)
chr4 (462-545)||(33529344-33529427)
chr4 (462-528)||(14854692-14854758)
chr4 (464-545)||(46250526-46250607)
chr4 (462-528)||(15133462-15133528)
chr4 (465-535)||(35334079-35334149)
chr4 (470-545)||(45994617-45994692)
chr4 (466-521)||(13948587-13948642)
chr4 (463-513)||(13686690-13686740)
chr4 (485-535)||(32005127-32005177)
chr4 (121-194)||(55294082-55294155)
chr4 (463-538)||(18841573-18841649)
chr4 (464-545)||(31308386-31308467)
chr4 (463-512)||(36990098-36990147)
chr4 (463-519)||(25768685-25768741)
chr4 (463-507)||(51853784-51853828)
[»] chr7 (25 HSPs)
chr7 (464-545)||(29059894-29059975)
chr7 (464-545)||(31492192-31492273)
chr7 (470-535)||(21747021-21747086)
chr7 (472-552)||(37339697-37339777)
chr7 (472-545)||(28665187-28665260)
chr7 (462-545)||(19477223-19477303)
chr7 (462-545)||(11486715-11486798)
chr7 (470-544)||(31776513-31776587)
chr7 (467-544)||(45778956-45779033)
chr7 (462-538)||(20207584-20207660)
chr7 (462-545)||(33299166-33299249)
chr7 (470-535)||(35707941-35708006)
chr7 (464-545)||(28537479-28537556)
chr7 (464-502)||(14545032-14545070)
chr7 (462-528)||(24172296-24172362)
chr7 (463-513)||(29428795-29428845)
chr7 (462-545)||(32470003-32470088)
chr7 (470-547)||(25421210-25421286)
chr7 (483-536)||(36821060-36821113)
chr7 (469-537)||(3231313-3231381)
chr7 (467-525)||(28828756-28828814)
chr7 (470-528)||(42741797-42741854)
chr7 (471-545)||(1424669-1424745)
chr7 (488-545)||(49118220-49118277)
chr7 (464-500)||(13254117-13254153)
[»] chr5 (9 HSPs)
chr5 (464-545)||(5123469-5123550)
chr5 (464-545)||(10592016-10592097)
chr5 (472-545)||(22187969-22188042)
chr5 (470-545)||(31113429-31113504)
chr5 (462-545)||(25983752-25983835)
chr5 (464-535)||(30784967-30785038)
chr5 (467-545)||(29553631-29553709)
chr5 (463-512)||(36212984-36213033)
chr5 (463-541)||(373739-373817)
[»] chr3 (21 HSPs)
chr3 (472-545)||(8757441-8757514)
chr3 (464-545)||(20861337-20861418)
chr3 (464-545)||(27763810-27763891)
chr3 (464-545)||(30995936-30996017)
chr3 (462-545)||(25224786-25224869)
chr3 (466-545)||(1642697-1642776)
chr3 (462-545)||(48204282-48204365)
chr3 (470-545)||(55123192-55123267)
chr3 (462-545)||(38331215-38331299)
chr3 (462-544)||(22288322-22288404)
chr3 (483-539)||(40318426-40318482)
chr3 (463-545)||(44941236-44941317)
chr3 (463-506)||(15446084-15446127)
chr3 (497-544)||(22288643-22288690)
chr3 (462-545)||(40294699-40294782)
chr3 (463-545)||(46725513-46725594)
chr3 (463-504)||(15283159-15283200)
chr3 (471-528)||(39950308-39950365)
chr3 (470-545)||(25739182-25739258)
chr3 (462-528)||(48210948-48211014)
chr3 (485-545)||(43621282-43621342)
[»] scaffold0182 (1 HSPs)
scaffold0182 (464-546)||(26420-26502)
[»] chr1 (19 HSPs)
chr1 (471-545)||(16756178-16756252)
chr1 (464-537)||(42297421-42297494)
chr1 (463-547)||(15642543-15642628)
chr1 (464-545)||(36806700-36806781)
chr1 (464-545)||(49071666-49071747)
chr1 (464-533)||(28724761-28724830)
chr1 (465-528)||(9780977-9781040)
chr1 (480-538)||(18428120-18428178)
chr1 (462-539)||(46864178-46864255)
chr1 (470-545)||(22022215-22022290)
chr1 (462-545)||(44913196-44913279)
chr1 (464-505)||(12035639-12035680)
chr1 (489-529)||(7242794-7242834)
chr1 (477-537)||(32534184-32534244)
chr1 (471-510)||(6607700-6607739)
chr1 (470-513)||(10367599-10367642)
chr1 (486-517)||(21774671-21774702)
chr1 (462-528)||(10750684-10750750)
chr1 (472-545)||(39547335-39547408)
[»] chr6 (12 HSPs)
chr6 (465-545)||(12836868-12836948)
chr6 (464-542)||(12411237-12411315)
chr6 (471-545)||(21910301-21910374)
chr6 (467-528)||(28099335-28099396)
chr6 (466-526)||(9536858-9536918)
chr6 (463-515)||(21028843-21028895)
chr6 (463-515)||(21028980-21029032)
chr6 (464-502)||(423744-423782)
chr6 (464-526)||(31412211-31412273)
chr6 (472-527)||(17177235-17177290)
chr6 (463-545)||(278479-278561)
chr6 (463-513)||(28933226-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (471-545)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (462-528)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (463-506)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 40 - 571
Target Start/End: Complemental strand, 37092657 - 37092140
Alignment:
Q  40 gaagaaatgaagtactcaatgagactagggtttctctcatttttgttagtagtgttgcttgttgtgacaagttcaaatggagaagacccttataggttct 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092657 gaagaaatgaagtactcaatgagactagggtttctctcatttttgttagtagtgttgcttgttgtgacaagttcaaatggagaagacccttataggttct 37092558  T
Q  140 atacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggttatatttgtgctctaaattatttttctttgtgattcttattttgt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  37092557 atacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggttatatttgtgttctaaattatttttctttgtgattcttatttttt 37092458  T
Q  240 aaaaatgtgaannnnnnnnnnnnnnnnnnnnnnnnnttggtttatgaaatggcaggggatattgataaatggacagtttccaggaccacagattgaatct 339  Q
    |||||||||||                         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092457 aaaaatgtgaaatatatagtgaatatatatatatatttggtttatgaaatggcaggggatattgataaatggacagtttccaggaccacagattgaatct 37092358  T
Q  340 gtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaactttcttgtttag 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  37092357 gtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaactttcttgttt-- 37092260  T
Q  440 nnnnnnnnnnnnaaagtatcatcttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 539  Q
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  37092259 ------------aaagtatcatcttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T
Q  540 aaaaaagactaatgttaacagtatgtgatgat 571  Q
    |||||||||||||||||| |||||||||||||    
T  37092171 aaaaaagactaatgttaagagtatgtgatgat 37092140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 535
Target Start/End: Original strand, 17981594 - 17981657
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 5394485 - 5394566
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||| |||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaa 5394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 37180053 - 37179972
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaa 37179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 464 - 528
Target Start/End: Original strand, 25423833 - 25423897
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 31579281 - 31579208
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 42745160 - 42745095
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 545
Target Start/End: Original strand, 14551571 - 14551644
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||  | |||| |||||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttataccaaaaaa 14551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 7020414 - 7020352
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 524  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||    
T  7020414 cttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 526  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 17655756 - 17655833
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagtt--gtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||| | |||||| |||||||||||||||||||||||||  ||||| |||||||||| | ||||| ||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttacgccaaaaaa 17655833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 464 - 535
Target Start/End: Complemental strand, 18105414 - 18105344
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatatccggttta 18105344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 13835511 - 13835445
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||||||| |||||| ||||||||||| | ||||||||||| || ||||||||| | ||||||||||    
T  13835511 cttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 504
Target Start/End: Complemental strand, 14121936 - 14121894
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtct 504  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14121936 cttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 1682120 - 1682175
Alignment:
Q  473 tttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||||| | ||| ||||||||||||||||||||||||| || | |||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 3562243 - 3562181
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 525  Q
    |||||| ||||||||||||||||| ||| |||| | |||||| |||||||| |||||| ||||    
T  3562243 ttgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 14412824 - 14412874
Alignment:
Q  478 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  14412824 gtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 39401118 - 39401072
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 528
Target Start/End: Complemental strand, 38373035 - 38372982
Alignment:
Q  475 tgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||||||||||||| ||| ||||||||   |||||| ||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacc 38372982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 526
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 526  Q
    |||||||  |||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 467 - 545
Target Start/End: Original strand, 2744025 - 2744103
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 4125076 - 4124995
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 7839305 - 7839224
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || ||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgggttatacaaaaaaa 7839224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 462 - 545
Target Start/End: Complemental strand, 19715780 - 19715696
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19715780 cttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacacaaaaaaa 19715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 13468797 - 13468716
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaa 13468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 30936093 - 30936174
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccggtttataccaaaaaa 30936174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 39086855 - 39086916
Alignment:
Q  478 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 539  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 524  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 8521793 - 8521867
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | ||||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 30056053 - 30056012
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctc 505  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 528
Target Start/End: Original strand, 40320184 - 40320249
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40320184 ttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 13005728 - 13005657
Alignment:
Q  466 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||| |||||||| ||||||  |||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacctagtttaca 13005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 36994546 - 36994503
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 24988586 - 24988633
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgca 509  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||    
T  24988586 cttgccgctcatttgagtcccacaatactcgagggattagtctccgca 24988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 505
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctc 505  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 31307118 - 31307037
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 277 - 410
Target Start/End: Original strand, 17345507 - 17345641
Alignment:
Q  277 tggtttatgaaatg-gcaggggatattgataaatggacagtttccaggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaat 375  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||||||||| |||||| | | |||||| |||    
T  17345507 tggtttgtgaaatgtgcaggggattttgataaatggacaatttcctgggccacagattgagtcagtgactaatgataatttgattatcaatgtttttaat 17345606  T
Q  376 agcttggatcaacctttccttatttcttggttagt 410  Q
    ||||||||| |||||||||| ||||||||||||||    
T  17345607 agcttggatgaacctttcctcatttcttggttagt 17345641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 277 - 408
Target Start/End: Complemental strand, 17139010 - 17138878
Alignment:
Q  277 tggtttatgaaatg-gcaggggatattgataaatggacagtttccaggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaat 375  Q
    |||||| ||||||| ||||||||| |||||||||||| | |||||||| ||||||||||| || || ||||||||||| |||||| | | |||||||||     
T  17139010 tggtttgtgaaatgtgcaggggattttgataaatggaaaatttccagggccacagattgagtcagtgactaatgataatttgattatcaatgttttcaac 17138911  T
Q  376 agcttggatcaacctttccttatttcttggtta 408  Q
    ||||||||| |||||||||| ||||||||||||    
T  17138910 agcttggatgaacctttcctcatttcttggtta 17138878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 17139270 - 17139161
Alignment:
Q  82 ttgttagtagtgttgcttgttgtgacaagttcaaatggagaagacccttataggttctatacttggaatgttacctatggagatatttatcctcttggag 181  Q
    ||||| |||||||| |||||||   || || ||||||||||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||| |||||||    
T  17139270 ttgttggtagtgttacttgttg---catgtgcaaatggagaagatccttataggttttataattggaatgttacatatggtgatatttatccacttggag 17139174  T
Q  182 ttaaacaacaggt 194  Q
    |||||||||||||    
T  17139173 ttaaacaacaggt 17139161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 17345229 - 17345338
Alignment:
Q  82 ttgttagtagtgttgcttgttgtgacaagttcaaatggagaagacccttataggttctatacttggaatgttacctatggagatatttatcctcttggag 181  Q
    ||||| |||||||| |||||||   || || ||||||||||||| ||||||||||| || | |||||||||||| ||||||||||||||||| |||||||    
T  17345229 ttgttggtagtgttacttgttg---catgtgcaaatggagaagatccttataggttttacaattggaatgttacatatggagatatttatccacttggag 17345325  T
Q  182 ttaaacaacaggt 194  Q
    |||||||||||||    
T  17345326 ttaaacaacaggt 17345338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 9012357 - 9012440
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||    
T  9012357 cttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 463 - 545
Target Start/End: Original strand, 35972431 - 35972513
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  35972431 ttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 51626358 - 51626285
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 464 - 528
Target Start/End: Original strand, 38766178 - 38766242
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 46016238 - 46016319
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 33529344 - 33529427
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||| || ||||||||||  | |||||||| |||||    
T  33529344 cttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaa 33529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 14854692 - 14854758
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  14854692 cttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 46250607 - 46250526
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| | || |||||||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggataaccggattacaccaaaaaa 46250526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 15133462 - 15133528
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  15133462 cttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 535
Target Start/End: Complemental strand, 35334149 - 35334079
Alignment:
Q  465 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggttta 35334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 45994617 - 45994692
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||  ||||||||  ||||| |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaa 45994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  466 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcgga 521  Q
    |||||||||||  || |||||||||||||||||||||||| ||||||| |||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 13686690 - 13686740
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  13686690 ttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttg 13686740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 32005177 - 32005127
Alignment:
Q  485 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccggttta 32005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 55294082 - 55294155
Alignment:
Q  121 gaagacccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggt 194  Q
    |||||||||||||| ||||  ||||||||  | || ||||| ||||| ||||||||||| ||||||||||||||    
T  55294082 gaagacccttatagattcttcacttggaaaatcacatatggtgatatctatcctcttggtgttaaacaacaggt 55294155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 538
Target Start/End: Original strand, 18841573 - 18841649
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgtgcgcggaggataccgggtttacac 538  Q
    |||||| | |||||| ||| |||| |||| |||||||||||||||| ||||| || ||||||||||| |||||||||    
T  18841573 ttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 31308386 - 31308467
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| |||| |||||||||||| | ||||||||||||  | |||||||| |||||| |||||   |||||| |||||||    
T  31308386 tgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttacatcaaaaaa 31308467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 36990147 - 36990098
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 512  Q
    ||||||||||||||  ||||||||||||||||| |||||| | |||||||    
T  36990147 ttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagtt 36990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 25768741 - 25768685
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcg 519  Q
    |||||| |||||||||| |||||||||| || |||||||||||| || ||| |||||    
T  25768741 ttgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 507
Target Start/End: Original strand, 51853784 - 51853828
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccg 507  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||    
T  51853784 ttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 29059894 - 29059975
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 31492192 - 31492273
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 21747086 - 21747021
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 472 - 552
Target Start/End: Complemental strand, 37339777 - 37339697
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaat 552  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||| ||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaatactaat 37339697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 545
Target Start/End: Original strand, 28665187 - 28665260
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 462 - 545
Target Start/End: Complemental strand, 19477303 - 19477223
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  19477303 cttgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggatagctggtttacacccaaaaa 19477223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 545
Target Start/End: Complemental strand, 11486798 - 11486715
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||  |||||| |||||||||||||| ||||||||| ||||||    
T  11486798 cttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacacaaaaaaa 11486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 544
Target Start/End: Original strand, 31776513 - 31776587
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 544  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| | |||||||||||| |||||| ||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggtttataccaaaaa 31776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 45778956 - 45779033
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 544  Q
    ||||| |||| ||| |||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 462 - 538
Target Start/End: Original strand, 20207584 - 20207660
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 538  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||    
T  20207584 cttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttacac 20207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 33299166 - 33299249
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||| ||||||||| | ||||||||||  | |||||||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  33299166 cttgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacacaaaaaaa 33299249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 35707941 - 35708006
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 28537479 - 28537556
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||  |||| |||||||| |||||| |||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccggtttataccaaaaaa 28537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 502
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagt 502  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 24172296 - 24172362
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||| ||| |||| ||||||||||||||| ||||||||||  ||||||| |||||||| |||||    
T  24172296 cttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 29428845 - 29428795
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    |||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  29428845 ttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 32470003 - 32470088
Alignment:
Q  462 cttgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||  ||||||||||| | |||||| ||| |||||    
T  32470003 cttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaaaa 32470088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 25421286 - 25421210
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaaga 547  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||  | ||||||||||  |||||||||||||||||    
T  25421286 ccatttgggtcccacaaagctcaagggattagtgtttgcagttgt-agtggaggatacccagtttacaccaaaaaaga 25421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 536
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  483 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac 536  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 3231313 - 3231381
Alignment:
Q  469 tccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||| ||||||||||||| | ||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 525  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||  ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 42741854 - 42741797
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacc 42741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 1424669 - 1424745
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcg--cggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||  || ||| |||||||||||||||||| |||  || |||| ||| | ||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgcacgaaggacacccgatttacaccaaaaaa 1424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 545
Target Start/End: Complemental strand, 49118277 - 49118220
Alignment:
Q  488 gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||||||| |||||| ||||| | || |||| ||||||||| ||||||    
T  49118277 gctcgagggattagtctctgcagttttgcgcagtggttacccggtttacacaaaaaaa 49118220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 500
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggatta 500  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 5123550 - 5123469
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 10592016 - 10592097
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 545
Target Start/End: Complemental strand, 22188042 - 22187969
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaa 22187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 31113429 - 31113504
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaa 31113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 25983752 - 25983835
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  25983752 cttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 464 - 535
Target Start/End: Complemental strand, 30785038 - 30784967
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 535  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 545
Target Start/End: Original strand, 29553631 - 29553709
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||||||  | ||||| |||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccagattacaacaaaaaa 29553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 36212984 - 36213033
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 512  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212984 ttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 541
Target Start/End: Complemental strand, 373817 - 373739
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaa 541  Q
    |||||||| |||||||||  |||||| || |||||||| |||||||||||| || |||||||||||   ||||||||||    
T  373817 ttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacaccaa 373739  T

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Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 472 - 545
Target Start/End: Original strand, 8757441 - 8757514
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 20861337 - 20861418
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 27763810 - 27763891
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacacaaaaaaa 27763891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 545
Target Start/End: Complemental strand, 30996017 - 30995936
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacctaaaaa 30995936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 25224786 - 25224869
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  25224786 cttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 466 - 545
Target Start/End: Original strand, 1642697 - 1642776
Alignment:
Q  466 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 545
Target Start/End: Complemental strand, 48204365 - 48204282
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||| |||||    
T  48204365 cttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaa 48204282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 55123192 - 55123267
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgatttataccaaaaaa 55123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 38331215 - 38331299
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac-accaaaaaa 545  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||    
T  38331215 cttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 544
Target Start/End: Original strand, 22288322 - 22288404
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 544  Q
    |||| |||||||||| ||  |||||| ||| ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288322 cttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  483 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 539  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 545
Target Start/End: Complemental strand, 44941317 - 44941236
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttataccaaaaaa 44941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 15446084 - 15446127
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 506  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15446084 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 22288643 - 22288690
Alignment:
Q  497 attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 544  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288643 attagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 40294699 - 40294782
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||  ||||||  ||||||||| ||||| ||||||||||||||||||| || |  |||||||| | ||||||||||||||    
T  40294699 cttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttacaccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 545
Target Start/End: Original strand, 46725513 - 46725594
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||  |||||  |||||||||||||  |||||||||| |||||    
T  46725513 ttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaa 46725594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 504
Target Start/End: Original strand, 15283159 - 15283200
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtct 504  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 39950308 - 39950365
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||   ||||||||||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 25739182 - 25739258
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgca-gttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||| ||  |||||   ||||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacaccaaaaaa 25739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 48211014 - 48210948
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||||| |||| ||||||||||| ||||||| |||  ||||||||||||  |||||| ||||||    
T  48211014 cttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacc 48210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 545
Target Start/End: Complemental strand, 43621342 - 43621282
Alignment:
Q  485 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||| | || ||| |||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaa 43621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 26420 - 26502
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaag 546  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 16756178 - 16756252
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 42297494 - 42297421
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 15642543 - 15642628
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca-ccaaaaaaga 547  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | |||||| ||||||||||    
T  15642543 ttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||| |||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 545
Target Start/End: Original strand, 49071666 - 49071747
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| | | ||||||||||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaa 49071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 464 - 533
Target Start/End: Original strand, 28724761 - 28724830
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtt 533  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 465 - 528
Target Start/End: Complemental strand, 9781040 - 9780977
Alignment:
Q  465 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  480 cccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 538  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 46864178 - 46864255
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 539  Q
    ||||||||||||||||||  ||||||| |||||||||||||||| ||||||| ||||  |||||||| | ||||||||    
T  46864178 cttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 22022215 - 22022290
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  || ||||||||||  || ||||| ||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 44913196 - 44913279
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| ||||||  |||| |||||||||   ||||||| ||||||    
T  44913196 cttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacacaaaaaaa 44913279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Original strand, 12035639 - 12035680
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctc 505  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 7242834 - 7242794
Alignment:
Q  489 ctcgagggattagtctccgcagttgtgcgcggaggataccg 529  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagataccg 7242794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 32534184 - 32534244
Alignment:
Q  477 ggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 537  Q
    |||| ||||||||||||| | |||||||||||| ||| |||| ||||||||| ||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 510
Target Start/End: Complemental strand, 6607739 - 6607700
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcag 510  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcag 6607700  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 10367599 - 10367642
Alignment:
Q  470 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttg 10367642  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 517
Target Start/End: Original strand, 21774671 - 21774702
Alignment:
Q  486 atgctcgagggattagtctccgcagttgtgcg 517  Q
    ||||||||||||||||||||||||||||||||    
T  21774671 atgctcgagggattagtctccgcagttgtgcg 21774702  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 528
Target Start/End: Original strand, 10750684 - 10750750
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||| |||||||| || ||||||| |||||||||||||||   |||||| |||| |||||||||    
T  10750684 cttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacc 10750750  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 545
Target Start/End: Complemental strand, 39547408 - 39547335
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||| |||| ||||||| |||| |||||| |||||||||||| |||| ||||||  | |||||||||| |||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaa 39547335  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 545
Target Start/End: Complemental strand, 12836948 - 12836868
Alignment:
Q  465 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaa 12836868  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 12411237 - 12411315
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaa 542  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |||||| ||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttataccaaa 12411315  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 545
Target Start/End: Original strand, 21910301 - 21910374
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaaaa 21910374  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 28099335 - 28099396
Alignment:
Q  467 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 466 - 526
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  466 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 526  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 21028895 - 21028843
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 515  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21028895 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 21029032 - 21028980
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 515  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21029032 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 502
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagt 502  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 526
Target Start/End: Original strand, 31412211 - 31412273
Alignment:
Q  464 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 526  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| |||||| || |||||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggata 31412273  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 17177235 - 17177290
Alignment:
Q  472 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatac 527  Q
    |||||| || |||||| |||||||||||| |||||| | |||||||||||||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 545
Target Start/End: Original strand, 278479 - 278561
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    ||||||||||||| ||||||||||  ||| |||||||||||  | ||||||  | ||||||||||| | ||||| ||||||||    
T  278479 ttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttaccccaaaaaa 278561  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 28933226 - 28933276
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 513  Q
    |||||| |||||||||| |||||||||||||| || |||| ||||||||||    
T  28933226 ttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttg 28933276  T

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Target: scaffold0013 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 545
Target Start/End: Complemental strand, 29197 - 29123
Alignment:
Q  471 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 545  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacacaaaaaaa 29123  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 528
Target Start/End: Complemental strand, 27279 - 27213
Alignment:
Q  462 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 528  Q
    ||||||| |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  27279 cttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 16108 - 16065
Alignment:
Q  463 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 506  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  16108 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

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