View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_11 (Length: 301)
Name: NF2142_high_11
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 36268203 - 36267937
Alignment:
| Q |
18 |
attattcacatttcactctcaacactacaaatatattgggtcggccttgtaaaccaattttggattttaattcaagtcacggatatagtgaggatgagta |
117 |
Q |
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| T |
36268203 |
attattcacatttcactctcaacactacaaatatattgggtcggccttgcaaaccaattttggattttaattcaagtcacggatatagtgaggatgag-- |
36268106 |
T |
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| Q |
118 |
tgagcatagggtttaaccatctacaacaaacccaattggtatataaagacttaatatgaaaaatggtatataaagtgatatttcggatcatttattaaga |
217 |
Q |
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| T |
36268105 |
----catagggtttaaccatctacaacaaccccaattggtatataaagacttaatatgaaaaatggtatataaagtgatatttcggatcatttattaaga |
36268010 |
T |
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| Q |
218 |
cttaatatgagcgaatactagcaacaannnnnnnccaagattatggatgcaattaaaatcgtggatttttcat |
290 |
Q |
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| T |
36268009 |
cttaatatgagcgaatactagcaacaatttttttccaagattatggatgcaattaaaatagtggatttttcat |
36267937 |
T |
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