View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2142_high_15 (Length: 247)

Name: NF2142_high_15
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2142_high_15
NF2142_high_15
[»] chr2 (24 HSPs)
chr2 (1-238)||(36267425-36267663)
chr2 (54-229)||(3586299-3586474)
chr2 (54-197)||(45258132-45258275)
chr2 (64-197)||(12168940-12169074)
chr2 (66-197)||(45714963-45715094)
chr2 (54-156)||(24499798-24499900)
chr2 (62-190)||(20120322-20120450)
chr2 (64-196)||(12127653-12127785)
chr2 (54-193)||(15825126-15825265)
chr2 (54-192)||(10923145-10923283)
chr2 (67-195)||(27846512-27846640)
chr2 (54-197)||(29710986-29711127)
chr2 (64-197)||(19919056-19919189)
chr2 (54-194)||(18135842-18135982)
chr2 (87-144)||(18770335-18770392)
chr2 (77-150)||(24755483-24755556)
chr2 (107-200)||(29137866-29137959)
chr2 (54-197)||(15390565-15390708)
chr2 (54-197)||(19050415-19050558)
chr2 (54-181)||(24157286-24157413)
chr2 (54-114)||(18772299-18772359)
chr2 (74-156)||(36022470-36022551)
chr2 (102-194)||(30638534-30638626)
chr2 (54-144)||(23257803-23257892)
[»] chr4 (18 HSPs)
chr4 (54-202)||(12683748-12683896)
chr4 (68-199)||(19809668-19809798)
chr4 (66-193)||(47253249-47253376)
chr4 (25-194)||(19643673-19643843)
chr4 (25-229)||(29157038-29157243)
chr4 (54-229)||(15742133-15742308)
chr4 (54-191)||(15514541-15514678)
chr4 (54-175)||(2674554-2674671)
chr4 (54-175)||(14601995-14602116)
chr4 (54-197)||(5518508-5518651)
chr4 (75-199)||(19818660-19818783)
chr4 (80-196)||(10981835-10981950)
chr4 (54-166)||(16012452-16012563)
chr4 (134-196)||(3981919-3981981)
chr4 (83-144)||(14003073-14003134)
chr4 (110-175)||(13171069-13171134)
chr4 (41-93)||(50151770-50151823)
chr4 (54-82)||(1638298-1638326)
[»] chr1 (24 HSPs)
chr1 (4-199)||(22414741-22414937)
chr1 (54-196)||(26977709-26977851)
chr1 (66-197)||(16030363-16030494)
chr1 (54-212)||(12177339-12177497)
chr1 (64-197)||(16050362-16050495)
chr1 (68-196)||(33101501-33101629)
chr1 (64-193)||(34273059-34273188)
chr1 (54-212)||(4601467-4601625)
chr1 (53-195)||(25408066-25408208)
chr1 (67-174)||(5671761-5671868)
chr1 (54-197)||(52565548-52565691)
chr1 (67-196)||(18246112-18246240)
chr1 (54-184)||(1659769-1659899)
chr1 (57-181)||(23280245-23280367)
chr1 (54-202)||(23728800-23728947)
chr1 (107-197)||(14255063-14255153)
chr1 (66-197)||(2140940-2141067)
chr1 (91-197)||(16299591-16299696)
chr1 (80-197)||(43344450-43344565)
chr1 (67-197)||(5459702-5459831)
chr1 (54-185)||(21098826-21098956)
chr1 (120-197)||(48637518-48637596)
chr1 (73-122)||(12032251-12032300)
chr1 (116-156)||(35858423-35858463)
[»] chr8 (23 HSPs)
chr8 (29-195)||(30477611-30477778)
chr8 (54-173)||(21416730-21416849)
chr8 (54-193)||(18322915-18323054)
chr8 (56-195)||(24507427-24507566)
chr8 (66-193)||(13754730-13754857)
chr8 (54-146)||(6928070-6928162)
chr8 (66-193)||(13764961-13765088)
chr8 (68-199)||(15058001-15058132)
chr8 (54-195)||(3459464-3459604)
chr8 (64-197)||(17927694-17927827)
chr8 (26-139)||(17698236-17698350)
chr8 (64-145)||(26916888-26916969)
chr8 (102-197)||(23269214-23269309)
chr8 (54-182)||(24576563-24576691)
chr8 (54-185)||(4565373-4565504)
chr8 (54-156)||(5859824-5859926)
chr8 (73-152)||(24070865-24070945)
chr8 (118-197)||(24677631-24677710)
chr8 (57-107)||(17319615-17319665)
chr8 (108-193)||(1909742-1909827)
chr8 (140-197)||(23497201-23497258)
chr8 (54-105)||(23497143-23497194)
chr8 (131-175)||(8490046-8490090)
[»] chr5 (21 HSPs)
chr5 (54-196)||(22903062-22903204)
chr5 (54-195)||(20025253-20025394)
chr5 (54-228)||(25537342-25537516)
chr5 (67-193)||(27083231-27083356)
chr5 (58-216)||(25333684-25333842)
chr5 (4-181)||(32418415-32418593)
chr5 (54-174)||(26994586-26994706)
chr5 (54-155)||(24647298-24647399)
chr5 (41-191)||(22865735-22865886)
chr5 (66-185)||(8938892-8939010)
chr5 (67-197)||(16621176-16621303)
chr5 (68-116)||(34493562-34493610)
chr5 (122-185)||(26348127-26348190)
chr5 (109-199)||(26163601-26163691)
chr5 (110-197)||(227714-227801)
chr5 (56-197)||(25828970-25829111)
chr5 (130-197)||(4477166-4477233)
chr5 (91-141)||(19993182-19993232)
chr5 (118-194)||(24546318-24546393)
chr5 (54-82)||(26348071-26348099)
chr5 (54-82)||(31202355-31202383)
[»] chr7 (22 HSPs)
chr7 (54-202)||(12644748-12644897)
chr7 (57-197)||(13292106-13292246)
chr7 (54-185)||(7486525-7486656)
chr7 (54-192)||(9135341-9135479)
chr7 (80-196)||(21161211-21161326)
chr7 (63-165)||(26762900-26763002)
chr7 (72-196)||(39879356-39879480)
chr7 (54-197)||(5863155-5863298)
chr7 (55-196)||(29373415-29373556)
chr7 (73-193)||(9867938-9868058)
chr7 (25-145)||(10287546-10287667)
chr7 (54-184)||(5925455-5925585)
chr7 (54-195)||(16987072-16987213)
chr7 (54-188)||(34854220-34854354)
chr7 (54-100)||(43172016-43172062)
chr7 (54-114)||(16204342-16204402)
chr7 (53-151)||(5928990-5929088)
chr7 (54-105)||(12265105-12265156)
chr7 (135-197)||(2226611-2226673)
chr7 (54-119)||(16203768-16203833)
chr7 (54-82)||(4781480-4781508)
chr7 (54-82)||(4813911-4813939)
[»] chr3 (28 HSPs)
chr3 (54-199)||(8122895-8123039)
chr3 (54-192)||(9801064-9801201)
chr3 (54-194)||(17143729-17143869)
chr3 (54-243)||(20622328-20622519)
chr3 (54-194)||(1770796-1770937)
chr3 (54-193)||(2311814-2311953)
chr3 (54-148)||(16704419-16704513)
chr3 (54-192)||(21342267-21342405)
chr3 (54-195)||(28715468-28715604)
chr3 (25-160)||(30606933-30607069)
chr3 (74-190)||(13085073-13085189)
chr3 (57-243)||(12516107-12516293)
chr3 (54-194)||(431296-431436)
chr3 (116-207)||(12108377-12108468)
chr3 (64-194)||(17485614-17485744)
chr3 (54-193)||(12731541-12731680)
chr3 (54-197)||(14860079-14860222)
chr3 (118-197)||(21649381-21649460)
chr3 (68-148)||(28723768-28723848)
chr3 (4-191)||(13932921-13933109)
chr3 (131-192)||(1475722-1475783)
chr3 (53-129)||(7835553-7835629)
chr3 (54-141)||(25495962-25496049)
chr3 (71-156)||(6109650-6109735)
chr3 (130-175)||(9007832-9007877)
chr3 (87-174)||(12251979-12252066)
chr3 (54-82)||(12108502-12108530)
chr3 (54-82)||(20118957-20118985)
[»] scaffold0360 (1 HSPs)
scaffold0360 (54-186)||(13901-14033)
[»] chr6 (41 HSPs)
chr6 (64-196)||(30680961-30681093)
chr6 (54-199)||(18147272-18147417)
chr6 (58-185)||(33596841-33596968)
chr6 (54-200)||(31295515-31295661)
chr6 (54-195)||(19305434-19305575)
chr6 (66-173)||(15480333-15480440)
chr6 (54-195)||(34064165-34064306)
chr6 (67-196)||(3404855-3404984)
chr6 (4-192)||(22572018-22572206)
chr6 (54-194)||(11087473-11087613)
chr6 (54-193)||(20148289-20148426)
chr6 (54-193)||(22184402-22184539)
chr6 (67-174)||(34572987-34573094)
chr6 (64-154)||(4251034-4251124)
chr6 (66-192)||(34187272-34187397)
chr6 (54-207)||(19730571-19730723)
chr6 (66-193)||(9292012-9292138)
chr6 (73-179)||(689856-689962)
chr6 (54-196)||(12449563-12449705)
chr6 (54-140)||(16130993-16131079)
chr6 (53-183)||(27860927-27861057)
chr6 (66-147)||(10115677-10115758)
chr6 (56-197)||(22497280-22497421)
chr6 (54-131)||(31423817-31423894)
chr6 (54-150)||(9403187-9403283)
chr6 (66-193)||(9277293-9277419)
chr6 (72-156)||(14268440-14268524)
chr6 (41-160)||(17380102-17380222)
chr6 (57-137)||(18566685-18566765)
chr6 (81-144)||(14080505-14080567)
chr6 (118-197)||(16343547-16343626)
chr6 (54-133)||(19277056-19277135)
chr6 (54-197)||(23768161-23768304)
chr6 (81-156)||(25008398-25008472)
chr6 (67-119)||(12203631-12203683)
chr6 (54-182)||(12424294-12424422)
chr6 (89-193)||(19331695-19331799)
chr6 (46-200)||(12487967-12488122)
chr6 (57-156)||(13823361-13823459)
chr6 (54-93)||(27772545-27772584)
chr6 (54-82)||(14184536-14184564)
[»] scaffold0291 (2 HSPs)
scaffold0291 (68-194)||(8571-8696)
scaffold0291 (54-156)||(15410-15512)
[»] scaffold0023 (1 HSPs)
scaffold0023 (54-188)||(95790-95924)
[»] scaffold0140 (1 HSPs)
scaffold0140 (54-174)||(6289-6409)
[»] scaffold0505 (1 HSPs)
scaffold0505 (68-197)||(7853-7982)
[»] scaffold0174 (1 HSPs)
scaffold0174 (82-229)||(29286-29431)
[»] scaffold0205 (2 HSPs)
scaffold0205 (54-197)||(22854-22997)
scaffold0205 (57-185)||(10898-11026)
[»] scaffold0054 (1 HSPs)
scaffold0054 (54-156)||(68782-68882)
[»] scaffold0013 (1 HSPs)
scaffold0013 (54-183)||(4404-4533)
[»] scaffold0002 (2 HSPs)
scaffold0002 (56-200)||(379681-379825)
scaffold0002 (54-138)||(120991-121075)
[»] scaffold0294 (1 HSPs)
scaffold0294 (54-156)||(222-325)
[»] scaffold0101 (1 HSPs)
scaffold0101 (57-196)||(10714-10840)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-175)||(215262-215383)
[»] scaffold0057 (1 HSPs)
scaffold0057 (57-211)||(73785-73939)
[»] scaffold0103 (1 HSPs)
scaffold0103 (53-165)||(40796-40908)
[»] scaffold0380 (1 HSPs)
scaffold0380 (54-144)||(6840-6930)
[»] scaffold0263 (1 HSPs)
scaffold0263 (87-195)||(20510-20618)
[»] scaffold0092 (1 HSPs)
scaffold0092 (54-202)||(21598-21746)
[»] scaffold0464 (1 HSPs)
scaffold0464 (54-211)||(11470-11623)
[»] scaffold0074 (1 HSPs)
scaffold0074 (66-194)||(35224-35353)
[»] scaffold0096 (1 HSPs)
scaffold0096 (54-82)||(42331-42359)
[»] scaffold0022 (1 HSPs)
scaffold0022 (131-183)||(69281-69333)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36267663 - 36267425
Alignment:
Q  1 ccaaatcatactccgcataatcttgagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaa 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36267663 ccaaatcatacgccgcataatcttgagacggttatccttgacgcacgtctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaa 36267564  T
Q  100 ccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtc 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  36267563 ccctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaggcacctttcattccactgcgaagactcatcgtc 36267464  T
Q  200 gtcatgccagaaatcgtcactgtcacaccgaagaattat 238  Q
    ||||||| |||||||||||||||| |||||||| |||||    
T  36267463 gtcatgctagaaatcgtcactgtcgcaccgaagcattat 36267425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 3586474 - 3586299
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||  |    
T  3586474 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagcgtcggagtcct 3586375  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacaccg 229  Q
    ||| |||  |||  |||||||||||||||||| |||||||| ||||| | | || |||| | |||| |||||||||    
T  3586374 aacgtgccggcatgcacctttcattccaccgcaaagactcaacgtcgccgtaccggaaaccttcaccgtcacaccg 3586299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 45258132 - 45258275
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| |||||||||||| |||||||| ||||||||||    
T  45258132 aagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagctttggagtgtt 45258231  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| ||| |||||||| ||||| |||||||||||||||||||||    
T  45258232 aacgtgcctgcagacatctttcgttccaccgcgaagactcatcg 45258275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 12169074 - 12168940
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttg-agcgttggagtgttaacatgcat 162  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||  ||| |    
T  12169074 ttgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcct 12168975  T
Q  163 gcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||||||||||||| ||||||||| |||||| ||||    
T  12168974 gcagacacctttcgttccaccgcaaagacttatcg 12168940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 45715094 - 45714963
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    |||||||| ||||||||||||||| ||||||| || |||| |||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  45715094 gcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgca 45714995  T
Q  166 gacacctttcattccaccgcgaagactcatcg 197  Q
      |||||||| |||||||  ||||||||||||    
T  45714994 tgcacctttcgttccaccaggaagactcatcg 45714963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 24499900 - 24499798
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||| || ||||||||||||||||||||||||| |    
T  24499900 aagggtgaacttgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgct 24499801  T
Q  154 aac 156  Q
    |||    
T  24499800 aac 24499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 20120450 - 20120322
Alignment:
Q  62 acttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgca 161  Q
    ||||| || |||||||||||||||||||||| ||||| | ||||| ||||||| |||||||||||||||||||||||||| || |||||| |||| |||     
T  20120450 acttgttttaccctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcc 20120351  T
Q  162 tgcagacacctttcattccaccgcgaaga 190  Q
    |||||||||||||| |||||||| |||||    
T  20120350 tgcagacacctttcgttccaccgtgaaga 20120322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 12127653 - 12127785
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    ||||||||||  ||| ||||||||||||||||||||| ||||||||||||   |||| |||||||||||||||||||||||||||||| |||| ||| ||    
T  12127653 ttgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctg 12127752  T
Q  164 cagacacctttcattccaccgcgaagactcatc 196  Q
    |||  ||||||| | ||||||||||||| ||||    
T  12127753 caggtacctttcgtcccaccgcgaagacccatc 12127785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 15825265 - 15825126
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    | |||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||   |||| |    
T  15825265 aagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgct 15825166  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||| ||| ||||||||| |||| ||||||| | |||||||    
T  15825165 aacgtgcctgcagacacatttcgttccaccacaaagactc 15825126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 10923145 - 10923283
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||| |   ||||||||||||| | ||||||||||||| ||| | |||| ||| ||||||||||| || |||||| |    
T  10923145 aagggtgaacttgcttcaccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgat 10923244  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagact 192  Q
    ||| ||| | || ||||||||| ||||||||||||||||    
T  10923245 aacgtgcctacatacacctttcgttccaccgcgaagact 10923283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 27846512 - 27846640
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    ||||||||||||||||  ||||||||| |||||| ||||||||| ||| |||||||||| |||||||||||||| |||||||||| |||| ||| |||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcag 27846611  T
Q  167 acacctttcattccaccgcgaagactcat 195  Q
     ||| |||| | | || ||||||||||||    
T  27846612 gcacttttcgtccaactgcgaagactcat 27846640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 29711127 - 29710986
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  ||||| || ||||  | || ||||| ||||||||||||||||||| |    
T  29711127 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcgtacactctctttc--aattccattagtgacttgagcgttggagtgct 29711030  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| |||||||| ||||||||  ||||||||||||||| |||||    
T  29711029 aacgtgcatgcatacaccttttgttccaccgcgaagacgcatcg 29710986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 19919056 - 19919189
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||| || ||||| ||||||  ||||| ||||  |||  | | ||    
T  19919056 ttgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctg 19919155  T
Q  164 cagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| |||||||| ||||||| |||||||| ||||    
T  19919156 caggcacctttcgttccaccacgaagactgatcg 19919189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 18135982 - 18135842
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||| || ||||||   |||||||| ||||| |||  |||||||| |||||||||| ||||||| ||||||||||  ||||  |    
T  18135982 aagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcgtcagagtact 18135883  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||| ||| | ||| |||||||||| |||||| |||||||||    
T  18135882 aacgtgcctacaggcacctttcatcccaccgtgaagactca 18135842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 18770392 - 18770335
Alignment:
Q  87 tcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagcgt 18770335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 24755556 - 24755483
Alignment:
Q  77 aaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagt 150  Q
    |||||| |||||||||||||||||  |||||||||||||||||  |||| ||| ||||||||||| ||||||||    
T  24755556 aaggtacgattcacttttcacaacaatttctacacactttttcagagttccatcactgacttgagggttggagt 24755483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 29137959 - 29137866
Alignment:
Q  107 tacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtcg 200  Q
    |||||||| |||||||||| ||||| |||||||||||| || ||| |||| | | |||||||| ||||| ||||||| ||| ||||||||||||    
T  29137959 tacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacctcgatgactcatcgtcg 29137866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 15390565 - 15390708
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  |||||||| ||| | |||| ||| ||| ||||||||||   |||| |    
T  15390565 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactgtttattagttccatcacttacttgagcgtcaaagtgct 15390664  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| |||    || || ||||| ||||| |||||||||||||||    
T  15390665 aacgtgccaataggcagctttcgttccatcgcgaagactcatcg 15390708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 19050415 - 19050558
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||| |||||| |||| ||||    |||||||||||||| |||  ||||| || ||||| ||||  |||||||||||||||||  ||||| |    
T  19050415 aagggtgaacttacttcactctcagggtacacatcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgct 19050514  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||  |  |||| | ||||||| |||||||||||| ||||||||    
T  19050515 aacgggtctgcaaatacctttcgttccaccgcgaacactcatcg 19050558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 24157286 - 24157413
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||      |||||||||||| |||  || ||  | | |||||||| ||||||||||||||||||  ||||| |    
T  24157286 aagggtgaacttgcttcaccctcaaggtacacaatacttttcacaacacttcttagactttatctctcagttccattactgacttgagcgtcagagtgct 24157385  T
Q  154 aacatgcatgcagacacctttcattcca 181  Q
    ||| |||||| || |||||||| |||||    
T  24157386 aacgtgcatgtaggcacctttcgttcca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 18772359 - 18772299
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacact 114  Q
    ||||||||||||||||||||||||||||     |||||||||||||| |||||||||||||    
T  18772359 aagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaacactttctacacact 18772299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 36022551 - 36022470
Alignment:
Q  74 ctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    |||||| ||||||||||||| | || | |||| |||| ||| ||||||||| ||| |||||||||||||||| ||||||||||    
T  36022551 ctcaagatatgattcactttgctca-cactttttacaaactctttctcagtctcaatactgacttgagcgttagagtgttaac 36022470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 30638626 - 30638534
Alignment:
Q  102 ctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||||| || |||| ||||| |||| |||||||||| ||||||| | ||||||||| ||  || ||||| ||||| ||||||||||| ||||||    
T  30638626 ctttccacgcactctttcttagttccattactgacatgagcgtcgaagtgttaacgtgtctgtagacatctttctttccaccgcgatgactca 30638534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 23257892 - 23257803
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    |||||||| |||| |||||||||||||||  ||||||||||| | || |||||||||||||  || ||| || | | ||||||||||||||    
T  23257892 aagggtgaccttgattcaccctcaaggtacaattcacttttc-ccacactttctacacactccttgtcatttccttcactgacttgagcgt 23257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 12683896 - 12683748
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  12683896 aagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgct 12683797  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtc 202  Q
    ||| ||| ||||| |||||||| ||||||||| ||||||||||||||||    
T  12683796 aacgtgcctgcaggcacctttcgttccaccgcaaagactcatcgtcgtc 12683748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 19809798 - 19809668
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaga 167  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||  |||||     
T  19809798 ttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcagg 19809699  T
Q  168 cacctttcattccaccgcgaagactcatcgtc 199  Q
     |||||||  || |||||||||||||||||||    
T  19809698 aacctttc-gtcaaccgcgaagactcatcgtc 19809668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 47253376 - 47253249
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  47253376 gcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgca 47253277  T
Q  166 gacacctttcattccaccgcgaagactc 193  Q
      |||||||  | ||||| |||||||||    
T  47253276 agcaccttttgtcccaccccgaagactc 47253249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 19643843 - 19643673
Alignment:
Q  25 gagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcag 123  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  19643843 gagacggttatcctcaacgcacgcctatataagggtgaacttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcag 19643744  T
Q  124 tttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    || |||||||||||| ||||| ||| || |||| | | ||| | |||||| | ||||| | ||||||||||    
T  19643743 ttccattactgacttaagcgtcggattggtaacgtacctgcgggcaccttccgttccatcacgaagactca 19643673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 29157243 - 29157038
Alignment:
Q  25 gagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcag 123  Q
    ||||||||||||||  |||| || ||||| |||||||||||| ||||||| |||||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  29157243 gagacggttatcctctacgcgcgcctatataagggtgaacttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcag 29157144  T
Q  124 tttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtc 223  Q
    || ||||||| |||||||||||||||||  ||| ||  ||||  |||||||| ||||||||| | || ||||||||| | | || |||| | || |||||    
T  29157143 ttccattactaacttgagcgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgcaaggattcatcgtcgccttaccggaaaccatcgctgtc 29157044  T
Q  224 acaccg 229  Q
    ||||||    
T  29157043 acaccg 29157038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 15742133 - 15742308
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||| ||||||||  |||||||||    |||||||||||||| |||  ||||||||||||||||||| ||||||||||||||||||  ||||| |    
T  15742133 aagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacacttcttacacactttttctcagttccattactgacttgagcgtaagagtgct 15742232  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacaccg 229  Q
    ||| |||  |||| ||||||||  |||||| |||||||||||||||| | || |||||| ||| || |||||||||    
T  15742233 aacgtgccagcaggcacctttcgctccaccacgaagactcatcgtcgccgtgtcagaaaccgttaccgtcacaccg 15742308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 15514541 - 15514678
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    ||||||| |||||| |||  |||||||| ||| |||||| ||||||||||||||||||||||||| |    
T  15514541 aagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgttggagtgct 15514640  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagac 191  Q
    ||| ||| | ||| |||| ||| |||||||||||||||    
T  15514641 aacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 2674554 - 2674671
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||    |||||||| ||||| ||||||| ||||||||||| |    
T  2674554 aagggtgaacttacttcatcctcaaggtatgattcacttttcacaacactttctacacac----tctcagttacattattgacttgtgcgttggagtgct 2674649  T
Q  154 aacatgcatgcagacacctttc 175  Q
    ||||||  |||| |||||||||    
T  2674650 aacatgactgcatacacctttc 2674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 14601995 - 14602116
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||| ||||||||||||||||||||||||     ||||||||||||| |||  |||||||| | | ||||||||||||||||||||||||||||| || |    
T  14601995 aaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgct 14602094  T
Q  154 aacatgcatgcagacacctttc 175  Q
    ||| ||| |||||||| |||||    
T  14602095 aacgtgcctgcagacaactttc 14602116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 5518651 - 5518508
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||||| |  ||||||| |||||| |||  |||||| | | ||||||||  ||||||||||||||||||| |||| |    
T  5518651 aagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgagcgttgaagtgct 5518552  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| ||  ||||  |||||||| |||||  ||||||||| ||||    
T  5518551 aacgtgtctgcactcacctttcgttccattgcgaagacttatcg 5518508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 19818783 - 19818660
Alignment:
Q  75 tcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacaccttt 174  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||  |  |||| | |||||||||||||||||||||| ||||||   || ||  ||||||    
T  19818783 tcaaggtataattcacttttcacaacactttctacacactcttgattggtttaagtactgacttgagcgttggagtgctaacatatctgtaggaaccttt 19818684  T
Q  175 cattccaccgcgaagactcatcgtc 199  Q
    |  ||||||||||||||||||||||    
T  19818683 c-gtccaccgcgaagactcatcgtc 19818660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 10981950 - 10981835
Alignment:
Q  80 gtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattc 179  Q
    |||||||||||||||| || | |||| |||||||| |||||| ||| ||||||||||||||| |||||||||  ||| |   ||||| |||||||| | |    
T  10981950 gtatgattcacttttccca-cactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcc 10981852  T
Q  180 caccgcgaagactcatc 196  Q
    ||| |||||||||||||    
T  10981851 cactgcgaagactcatc 10981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 16012452 - 16012563
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||| ||||| ||    |||||| ||||||  |||  |||||||| | |||||||| |||||||||||||||||| ||||||||    
T  16012452 aagggtgaacttgcttcacc-tcaagatacatatcacttctcacaatgcttcttacacactctatctcagttccattactgacttgagcgtcggagtgtt 16012550  T
Q  154 aacatgcatgcag 166  Q
    ||| ||| |||||    
T  16012551 aacgtgcctgcag 16012563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 3981981 - 3981919
Alignment:
Q  134 gacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    |||||||| ||||||||| |||| ||||||||  |||||||| |||||||| |||||||||||    
T  3981981 gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatc 3981919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 14003073 - 14003134
Alignment:
Q  83 tgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    ||||||| |||||| ||| ||||| ||| ||| |||||||||| ||||||||||||||||||    
T  14003073 tgattcatttttcataacactttccacaaactctttctcagttccattactgacttgagcgt 14003134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 13171134 - 13171069
Alignment:
Q  110 acactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttc 175  Q
    ||||| || ||||||| ||||||||||||||| ||||||||| |||| ||| ||||  ||||||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttc 13171069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 50151770 - 50151823
Alignment:
Q  41 acgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttt 93  Q
    ||||||| ||||| ||||||||  |||||||||||||||||||||||| |||||    
T  50151770 acgcacgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 1638298 - 1638326
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  1638298 aagggtgaacttgcttcaccctcaaggta 1638326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 22414937 - 22414741
Alignment:
Q  4 aatcatactccgcataatcttgagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccc 102  Q
    |||||||| ||||||||    ||||| ||||| || |||||| | ||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |    
T  22414937 aatcatacgccgcataacacggagaccgttatgctcgacgcatgcctatacaaggatgaacttgcttcaccctcaagatatgattcacttttcacaacac 22414838  T
Q  103 tttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtc 199  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||| |||| ||| ||| | |||||||| ||||||||| |||||||||||||    
T  22414837 tttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgcaaagactcatcgtc 22414741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 26977851 - 26977709
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||| || |||||||||||||||||||||||||| |||||||||  ||||||||||||| |||||| ||| ||||||||||||||||||||||||| |    
T  26977851 aagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttccattactgacttgagcgttggagtgct 26977752  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    ||| ||| ||||| |||||||| ||||||||| |||| |||||    
T  26977751 aacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 16030494 - 16030363
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||||||||||||| || || || |||| ||| ||||    
T  16030494 gcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgca 16030395  T
Q  166 gacacctttcattccaccgcgaagactcatcg 197  Q
    ||||||||||||||||||| ||||||||||||    
T  16030394 gacacctttcattccaccgtgaagactcatcg 16030363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 12177497 - 12177339
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||| ||||||||||||  ||||||||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| || |||||| |    
T  12177497 aaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgct 12177398  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaa 212  Q
    ||| |||||| || |||||||| |||||||||||  ||||| || |||| | |||||||    
T  12177397 aacgtgcatgtaggcacctttcgttccaccgcgattactcaacgccgtcgtaccagaaa 12177339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 16050495 - 16050362
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||| |||||||||||| |||||||||||| || ||||||||||||| |||||||||| ||| | ||||||||||||||||||| |||| ||| ||    
T  16050495 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctg 16050396  T
Q  164 cagacacctttcattccaccgcgaagactcatcg 197  Q
    |||| |||||||  ||||||||||||||||||||    
T  16050395 cagatacctttctatccaccgcgaagactcatcg 16050362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 33101501 - 33101629
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaga 167  Q
    |||||||||||| || | ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||| ||||      
T  33101501 ttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatg 33101600  T
Q  168 cacctttcattccaccgcgaagactcatc 196  Q
    |||||||||||| || |||||||||||||    
T  33101601 cacctttcattctacagcgaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 34273188 - 34273059
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||| | |||||||||||||| |||||||| |||| ||| ||    
T  34273188 ttgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttg 34273089  T
Q  164 cagacacctttcattccaccgcgaagactc 193  Q
    |||  ||||||| | ||||||| |||||||    
T  34273088 caggtacctttcgtcccaccgcaaagactc 34273059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 4601467 - 4601625
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||| |    |||  ||||||| | |||  |||||| | ||||||||||||||||||||||||||||| |||||| |    
T  4601467 aagggtgaacttgcttcaccctcaagggacacatcaaatttcacagcacttattacacattatttctcagtttcattactgacttgagcgtcggagtgct 4601566  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaa 212  Q
    ||| ||| ||||| |||||||| |||||||||||||||| |||| || |||||| ||||    
T  4601567 aacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgccgccatgccggaaa 4601625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 25408208 - 25408066
Alignment:
Q  53 aaagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    |||||||||||||||||||||||||||| |    |||||||||||||| |||  |||||||| | | ||||||||||||||||||||||| ||||||||     
T  25408208 aaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgc 25408109  T
Q  153 taacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    |||| ||  ||||| ||||||||||||||||||  ||||||||    
T  25408108 taacgtgtctgcaggcacctttcattccaccgcagagactcat 25408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 5671868 - 5671761
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||| ||| | ||     
T  5671868 cttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaa 5671769  T
Q  167 acaccttt 174  Q
    ||||||||    
T  5671768 acaccttt 5671761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 52565691 - 52565548
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| |||||| | |||| ||| |||||| | ||||||||||||||||  ||||| |    
T  52565691 aaggatgaacttgcttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgct 52565592  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| ||  ||||| |||||||| ||||| | |||| ||||||||    
T  52565591 aacgtgtctgcaggcacctttcgttccatcacgaaaactcatcg 52565548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 18246240 - 18246112
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    ||||||||||||||||||| ||||||||| || | |||| || ||||| ||||||| ||  | |||| |||||||||||||||||||||| ||| | |||    
T  18246240 cttcaccctcaaggtatgaatcacttttctca-cactttttatacactctttctcaattctaatactcacttgagcgttggagtgttaacgtgcttacag 18246142  T
Q  167 acacctttcattccaccgcgaagactcatc 196  Q
    ||||||||| ||||||||| ||||||||||    
T  18246141 acacctttcgttccaccgccaagactcatc 18246112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 1659769 - 1659899
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||| ||||| |||| |||   |||||||||||||| |||  |||||| | |||||||| | ||||| ||||||||||||||||||| |    
T  1659769 aagggtgaacttgctccacccacaagatatttctcacttttcacaacacttcttacacattctttctcagatccattattgacttgagcgttggagtgat 1659868  T
Q  154 aacatgcatgcagacacctttcattccaccg 184  Q
    ||| || ||| ||||||||||| ||||||||    
T  1659869 aacgtgtatgtagacacctttcgttccaccg 1659899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 23280245 - 23280367
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||||||||||| || || |||||||||||||||| || |  |||||||||  ||||||| ||||||||||||||| ||| ||||| ||||    
T  23280245 ggtgaacttgcttcaccctcatggcattattcacttttcacaacactatacacacacttt--ctcagttccattactgacttgagagtttgagtgataac 23280342  T
Q  157 atgcatgcagacacctttcattcca 181  Q
    |||  ||||| |||||||| |||||    
T  23280343 atgtctgcaggcacctttcgttcca 23280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 23728800 - 23728947
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||| |||||||||||||||    |||||||||||||| |||  |||||||| ||||||| || ||||| ||||||||||||   | || |    
T  23728800 aagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgct 23728899  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtc 202  Q
    ||| ||| ||||  |||||||| || |||||||||||||||||||||||    
T  23728900 aacgtgcctgcatccacctttcgtt-caccgcgaagactcatcgtcgtc 23728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 14255063 - 14255153
Alignment:
Q  107 tacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| || | ||| ||||| |||| ||| ||||||| |||||||||||||    
T  14255063 tacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactcatcg 14255153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 2140940 - 2141067
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacact-ttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgc 164  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||| | |||| |||     |||||||||||||||||||||||| |||  ||| |||    
T  2140940 gcttcaccctcaaggtatggttcactttccacaacactttctacacattcttttttca-----attactgacttgagcgttggagtgctaagttgcctgc 2141034  T
Q  165 agacacctttcattccaccgcgaagactcatcg 197  Q
    | ||||||||| ||| |||| ||||| ||||||    
T  2141035 atacacctttcgttctaccgtgaagattcatcg 2141067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 16299591 - 16299696
Alignment:
Q  91 ttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaaga 190  Q
    |||||||||| |||  ||| |||| |||||||||||||||||| |||||| ||| |||||| |||  ||||||||||||| |||| ||||||||| ||||    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aaga 16299689  T
Q  191 ctcatcg 197  Q
    |||||||    
T  16299690 ctcatcg 16299696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 43344450 - 43344565
Alignment:
Q  80 gtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattc 179  Q
    |||||||||||||||| |  | |||| |||||||| ||||| ||||||| |||||||||||||||| ||||| |||| |   |||||||||||||||| |    
T  43344450 gtatgattcacttttcccc-cactttttacacactctttct-agtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatcc 43344547  T
Q  180 caccgcgaagactcatcg 197  Q
    |||||| |||||||||||    
T  43344548 caccgcaaagactcatcg 43344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 5459702 - 5459831
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    ||||| || ||| |||||||||||||| |||||| ||||||||||||| |||||||| | | ||||||  |||| |||||||||| |||| | | ||||     
T  5459702 cttcatccccaatgtatgattcactttacacaacactttctacacactctttctcag-tccgttactgttttgaacgttggagtgctaacgtacctgcat 5459800  T
Q  167 acacctttcattccaccgcgaagactcatcg 197  Q
     |||||||| | ||||| |||||||||||||    
T  5459801 gcacctttcgtcccaccacgaagactcatcg 5459831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 21098826 - 21098956
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttt-tctcagtttcattactgacttgagcgttggagtgt 152  Q
    |||||||||||||||||||||||||||||     ||||||||| ||| |||  || | |||||| | |||||| |||||||||||||| ||| ||||||     
T  21098826 aagggtgaacttgcttcaccctcaaggtacacaacacttttcataacactta-ta-atacttttctatcagttccattactgacttgatcgtcggagtgc 21098923  T
Q  153 taacatgcatgcagacacctttcattccaccgc 185  Q
    |||  ||| ||||| |||||||| |||||||||    
T  21098924 taatgtgcctgcagccacctttcgttccaccgc 21098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 48637596 - 48637518
Alignment:
Q  120 tcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgc-gaagactcatcg 197  Q
    |||||| ||||||||||||||||||  ||||| | || ||| ||||| |||||||| ||| ||||| ||||||||||||    
T  48637596 tcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcg 48637518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 12032251 - 12032300
Alignment:
Q  73 cctcaaggtatgattcacttttcacaaccctttctacacactttttctca 122  Q
    ||||||| ||||||||| ||| |||||| ||||||||||||| |||||||    
T  12032251 cctcaagttatgattcattttacacaacactttctacacactctttctca 12032300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 35858423 - 35858463
Alignment:
Q  116 tttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    |||||||||||| ||||| |||||||||||| |||||||||    
T  35858423 tttctcagtttctttacttacttgagcgttgaagtgttaac 35858463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 30477778 - 30477611
Alignment:
Q  29 cggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttc 127  Q
    ||||||| || |||||||| ||||| ||||||||  || |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  30477778 cggttattctcgacgcacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttc 30477679  T
Q  128 attactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
     ||||||||||||||||||||||| |||| |||||||||||| ||||| |  |||||||||| |||||    
T  30477678 gttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgtctcaccgcgaagtctcat 30477611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 21416849 - 21416730
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  21416849 aagggtgaacttgcttcacccttaaggtacgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtgct 21416750  T
Q  154 aacatgcatgcagacacctt 173  Q
    |||  |||||||||||||||    
T  21416749 aacgagcatgcagacacctt 21416730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 18323054 - 18322915
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||  |||||||||| | ||||||||||  ||||||||||||||||||||||||||    
T  18323054 aagggtgaccttgcttcatcctcaatgtatgattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgtt 18322955  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||||||  ||||  |||||||  |||||||||||||||||    
T  18322954 aacatgtctgcatgcaccttttgttccaccgcgaagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 24507566 - 24507427
Alignment:
Q  56 gggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaa 155  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| || ||||| |||||||| |||||||||  |||    
T  24507566 gggtgaacctacttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaa 24507467  T
Q  156 catgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    | ||||||||||||||||||  |||||||| |||||||||    
T  24507466 cgtgcatgcagacacctttcgctccaccgcaaagactcat 24507427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 13754857 - 13754730
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||  |||    
T  13754857 gcttcaccctcaaggtaggattcactttacacaacactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagca 13754758  T
Q  166 gacacctttcattccaccgcgaagactc 193  Q
    | |||||||| | |||  ||||||||||    
T  13754757 ggcacctttcgtcccattgcgaagactc 13754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 6928070 - 6928162
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttg 146  Q
    ||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  6928070 aagggtgaaattaattcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgttg 6928162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 13765088 - 13764961
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    |||||||| |||||  || ||||||||| |||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| ||||| ||| ||||    
T  13765088 gcttcaccttcaagacattattcactttacacaacactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgca 13764989  T
Q  166 gacacctttcattccaccgcgaagactc 193  Q
    |||||||||| |  ||||||||||||||    
T  13764988 gacacctttcgtcacaccgcgaagactc 13764961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 15058132 - 15058001
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaga 167  Q
    |||||||||||||||||||| | ||||||| || ||||||||||| ||||||||| |||||||||| ||||| |||||| |||| |||| ||| ||||      
T  15058132 ttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatg 15058033  T
Q  168 cacctttcattccaccgcgaagactcatcgtc 199  Q
    |||||||| ||||||| | |||||||||||||    
T  15058032 cacctttcgttccaccacaaagactcatcgtc 15058001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 3459464 - 3459604
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcac-aaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| ||| ||||||||||||| || ||||||| |||||||||||||||||  ||||||     
T  3459464 aagggtgaacttgcttcacc-tcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgagcgccggagtgc 3459562  T
Q  153 taacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    |||| ||| ||||| ||||||||   |||||||||||||||||    
T  3459563 taacgtgcctgcaggcacctttc-gcccaccgcgaagactcat 3459604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 17927694 - 17927827
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||||||| |||||||||||||| ||||| ||| ||||||||| |||   |||||||| |||||||||||| |||||||||||| |||| ||||||    
T  17927694 ttgcttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagtgctaacgtgcatg 17927793  T
Q  164 cagacacctttcattccaccgcgaagactcatcg 197  Q
    ||  |||||||| | ||||| | |||| ||||||    
T  17927794 catgcacctttcgtcccaccacaaagagtcatcg 17927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 17698236 - 17698350
Alignment:
Q  26 agacggttatccttgacgcacgtctataaa-gggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagt 124  Q
    |||||||||| || ||||| || ||||| | |||||  |||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||| ||    
T  17698236 agacggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctcaaagtataattcacttttcacaacactttctacacactctttctcggt 17698335  T
Q  125 ttcattactgacttg 139  Q
    | |||||||||||||    
T  17698336 tccattactgacttg 17698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 26916888 - 26916969
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgtt 145  Q
    ||||||||  |||||||||||| |||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||    
T  26916888 ttgcttcatgctcaaggtatgactcacttttcacaacactttctacacactctctctcagttccattactgacttgagcgtt 26916969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 23269309 - 23269214
Alignment:
Q  102 ctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||||||||||||| ||| |||||| |||||||||||| || ||||||||| |||| ||| || ||||||||||| ||||||||| |||||||||||    
T  23269309 ctttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcg 23269214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 24576563 - 24576691
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||| ||||||||||||||||    | |||||||||||| |||  ||||||||  || | |||| ||||||||||||||||||  |||||||    
T  24576563 aagggtgaacttccttcaccctcaaggtacacattacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtcagagtgtt 24576662  T
Q  154 aacatgcatgcagacacctttcattccac 182  Q
    ||| ||| ||||| |||||||| ||||||    
T  24576663 aacgtgcctgcaggcacctttcgttccac 24576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 4565373 - 4565504
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||     ||||||||||||| |||  || ||  | | | |||||||||||||| ||||||  || |||||| |    
T  4565373 aagggtgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttatactttctctttcagtttcattactaacttgattgtcggagtgct 4565472  T
Q  154 aacatgcatgcagacacctttcattccaccgc 185  Q
    ||||||| |||||||||||||| |||||||||    
T  4565473 aacatgcctgcagacacctttcgttccaccgc 4565504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 5859926 - 5859824
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| |||||||||  ||||||||| ||||||||| ||| ||| || || ||||||| ||||| |||| ||||| ||||||||||||||||||| |    
T  5859926 aagggtgaccttgcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgagcgttggagtgct 5859827  T
Q  154 aac 156  Q
    |||    
T  5859826 aac 5859824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 24070945 - 24070865
Alignment:
Q  73 cctcaaggt-atgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||| ||||| |||| |||||||||||| || ||||||||||    
T  24070945 cctcaaggttatgattcacttctcacaacactttctacacactctttcttagttccattactgacttaagtgttggagtgt 24070865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 24677631 - 24677710
Alignment:
Q  118 tctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||||||| || ||||||||||||| |||||||| |||||||| ||||| |||| ||| || ||||| ||||||||||||    
T  24677631 tctcagttccaatactgacttgagcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaagactcatcg 24677710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 17319615 - 17319665
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttct 107  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  17319615 ggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct 17319665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 1909742 - 1909827
Alignment:
Q  108 acacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||||||| ||||||||||||||||||||||| ||||||| | || |||| ||  ||||  |||||||| |||||| || |||||||    
T  1909742 acacactctttctcagtttcattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccactgcaaagactc 1909827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 23497201 - 23497258
Alignment:
Q  140 agcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||||||||||| |||||||| |||||| ||||||| |||||| || |||||||||||    
T  23497201 agcgttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcg 23497258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 23497143 - 23497194
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacccttt 105  Q
    ||||||||  |||||| ||||||||||||||||||||| |||||||| ||||    
T  23497143 aagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 8490046 - 8490090
Alignment:
Q  131 actgacttgagcgttggagtgttaacatgcatgcagacacctttc 175  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||||    
T  8490046 actgacttgggcgttggagtattaacgtgcttgcagacacctttc 8490090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 22903204 - 22903062
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||| |    
T  22903204 aagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgct 22903105  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    ||||||| | |  | ||||||| |||||||||||| |||||||    
T  22903104 aacatgcctacgaaaacctttcgttccaccgcgaaaactcatc 22903062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 20025394 - 20025253
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| || ||||||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||   ||||||||||||||    
T  20025394 aagggtgacctagcttcaccctcaaggaatgattcactttacacaacactttctacacactctttctcagtttcattcctgacagtagcgttggagtgtt 20025295  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    ||| ||  |||||||||||||| | |||||||||||||||||    
T  20025294 aacgtgtgtgcagacacctttcgtcccaccgcgaagactcat 20025253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 25537516 - 25537342
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||| |||||||||||||||||   |||||||||||||| |||  |||||| | |||||||||| ||||||   |||||||||||||||| |    
T  25537516 aagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatcttgagcgttggagtgct 25537417  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacacc 228  Q
    ||| ||| ||||| |||||||| ||||||||||||||||| ||| || | ||||||||| ||| || ||||||||    
T  25537416 aacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgccgccgtgccagaaaccgttaccgtcacacc 25537342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 27083231 - 27083356
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||| ||||||||| |||| ||  |||||    
T  27083231 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgcag 27083329  T
Q  167 acacctttcattccaccgcgaagactc 193  Q
    |||| |||| ||| |||||||||||||    
T  27083330 acacatttcgttctaccgcgaagactc 27083356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 25333842 - 25333684
Alignment:
Q  58 gtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaaca 157  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||| | ||| |||| |||||||||||||||||| |||||  ||| |    
T  25333842 gtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgacttgagcgtcggagtactaata 25333743  T
Q  158 tgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgt 216  Q
    ||| ||||   |||||||  ||||||||||||| | |||||||||||||| ||| ||||    
T  25333742 tgcctgcaagtacctttcgctccaccgcgaagattaatcgtcgtcatgcccgaagtcgt 25333684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 32418415 - 32418593
Alignment:
Q  4 aatcatactccgcataatcttgagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccc 102  Q
    ||||| || |||||||| |  ||||| ||||  ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |    
T  32418415 aatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaacttgcttcatcctcaaggtatgattcactcttcacaacac 32418514  T
Q  103 tttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattcca 181  Q
    | |||||||||| |||||| ||| ||| | ||||||||||||  ||||||| || ||| ||||| | |||||| |||||    
T  32418515 tctctacacactctttctctgttccatcagtgacttgagcgtcagagtgttgacgtgcctgcaggctcctttcgttcca 32418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 26994586 - 26994706
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| | ||||| ||||| ||||||| || |||||||||||||||||| |||||| |    
T  26994586 aagggtgaccttgcttcacccccaaggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagcgtcggagtgct 26994685  T
Q  154 aacatgcatgcagacaccttt 174  Q
    ||| ||  || ||||||||||    
T  26994686 aacgtgtctgaagacaccttt 26994706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 24647399 - 24647298
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||| |||||||   |||||||||||||| |||  |||||||| ||| |||||| ||||||||| |||||||||||||||||    
T  24647399 aagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgagcgttggagtgtt 24647300  T
Q  154 aa 155  Q
    ||    
T  24647299 aa 24647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 22865886 - 22865735
Alignment:
Q  41 acgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttg 139  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    ||||||||||||||  ||  ||||||||||||||||||| ||||||| |||||    
T  22865886 acgcacgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttg 22865787  T
Q  140 agcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagac 191  Q
    |||||   |||| |||| | | ||||  |||||||| |||||| ||||||||    
T  22865786 agcgtcaaagtgctaacgtacctgcatgcacctttcgttccactgcgaagac 22865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 8939010 - 8938892
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    ||||||||||||| |||||||||||||||| || | |||| |||||||| |||||||||| || |||||||| |||| ||||||||||||| ||| ||||    
T  8939010 gcttcaccctcaatgtatgattcacttttccca-cactttttacacactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgca 8938912  T
Q  166 gacacctttcattccaccgc 185  Q
      |||||||| ||| |||||    
T  8938911 tgcacctttcgttctaccgc 8938892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 16621303 - 16621176
Alignment:
Q  67 cttcaccctcaaggtatgattcactttt--cacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgc 164  Q
    |||||||| |||||||||||||||||||  |||||     | | |||||| |||||||||| || || || ||||||||||| ||||||||| ||| | |    
T  16621303 cttcacccccaaggtatgattcactttttccacaa-----ttttcacactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctac 16621209  T
Q  165 agacacctttcattccaccgcgaagactcatcg 197  Q
    | ||||||||| |||||||| ||||||||||||    
T  16621208 atacacctttcgttccaccgtgaagactcatcg 16621176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 34493610 - 34493562
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacacttt 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  34493610 ttcaccctcaaggtatgattcacttttcacaacactttctacactcttt 34493562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 26348127 - 26348190
Alignment:
Q  122 agtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgc 185  Q
    |||| ||||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 26348190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 26163691 - 26163601
Alignment:
Q  109 cacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtc 199  Q
    |||||| ||||| ||||||||| |||||||||||||||||||| |||  ||||||||  |||||||| ||||| | | ||||||| |||||    
T  26163691 cacactctttcttagtttcatttctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttccatcccaaagactcgtcgtc 26163601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 227714 - 227801
Alignment:
Q  110 acactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||||| ||||||||||||| |  | ||||||||||| ||||| |||| ||| |||||||||  ||||| ||||| |||||||||||||    
T  227714 acactctttctcagtttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcatcccaccacgaagactcatcg 227801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 25828970 - 25829111
Alignment:
Q  56 gggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaa 155  Q
    ||||||||||| ||||||||||||| |    |||||||||||||  |||  |||||||||||||||| || ||||| ||||| ||||||  || || |||    
T  25828970 gggtgaacttgtttcaccctcaagggacacatcacttttcacaatacttcttacacactttttctcaattccattattgactagagcgtcagattgctaa 25829069  T
Q  156 catgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    | ||| || | |||| |||  ||| |||||||||||| ||||    
T  25829070 cgtgcctgaatacacattttgttcaaccgcgaagacttatcg 25829111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 4477233 - 4477166
Alignment:
Q  130 tactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||||||||||||||||||||| ||||| ||| ||| | |||| ||| | ||||||| |||||||||||    
T  4477233 tactgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcg 4477166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 19993182 - 19993232
Alignment:
Q  91 ttttcacaaccctttctacacactttttctcagtttcattactgacttgag 141  Q
    |||||||||| ||||| |||| || |||||||||| |||||||||||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgag 19993232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 24546393 - 24546318
Alignment:
Q  118 tctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||||| || |||||||||||| ||||| |||||  |||| ||| |||||||||||||| |||||||  |||||||||    
T  24546393 tctcaattccattactgactttagcgt-ggagttctaacgtgcctgcagacacctttcgttccaccatgaagactca 24546318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 26348071 - 26348099
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  26348071 aagggtgaacttgcttcaccctcaaggta 26348099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 31202355 - 31202383
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  31202355 aagggtgaacttgcttcaccctcaaggta 31202383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 12644897 - 12644748
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcac-aaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| ||| ||||| |||||||||||||||||| |||||||||| ||||||| ||||||     
T  12644897 aagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccacacactttttctcagttccattactgacctgagcgtcggagtgc 12644798  T
Q  153 taacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtc 202  Q
    |||| ||| ||||  |||||||| |||||||| |||||||||||||||||    
T  12644797 taacttgcctgcatgcacctttcgttccaccgtgaagactcatcgtcgtc 12644748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 13292106 - 13292246
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||||||||||||||||    |||||||||||||| |||  |||||||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  13292106 ggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaac 13292205  T
Q  157 atgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
     | | |||||||||||||| ||||||| |||||||||||||    
T  13292206 gtacctgcagacacctttccttccaccacgaagactcatcg 13292246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 7486656 - 7486525
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||| ||||||| | |||| ||||||||||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||||||||||| |    
T  7486656 aagggtgaactttcttcacctttaagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgct 7486557  T
Q  154 aacatgcatgcagacacctttcattccaccgc 185  Q
    ||| ||| ||||  ||||||||||||||||||    
T  7486556 aacgtgcctgcatgcacctttcattccaccgc 7486525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 9135341 - 9135479
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||||||| ||||||| || ||||||||||||||||||| ||||| |    
T  9135341 aagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttagagtgct 9135440  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagact 192  Q
    ||| ||| |  |  |||||||| |||||||| |||||||    
T  9135441 aacgtgcctatatgcacctttcgttccaccgtgaagact 9135479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 21161326 - 21161211
Alignment:
Q  80 gtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattc 179  Q
    ||||||||||||||||||||| ||||||||||||  ||||| || | ||||||||||||||||||||||||| |||| ||| |||||||| ||||| |||    
T  21161326 gtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttc 21161228  T
Q  180 caccgcgaagactcatc 196  Q
    |||||||||||||||||    
T  21161227 caccgcgaagactcatc 21161211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 26762900 - 26763002
Alignment:
Q  63 cttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcat 162  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||| | ||||||||||||||||||||||| |||| ||| |    
T  26762900 cttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcct 26762999  T
Q  163 gca 165  Q
    |||    
T  26763000 gca 26763002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 39879480 - 39879356
Alignment:
Q  72 ccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacc 171  Q
    |||||| || ||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||  ||||||||| ||  ||||| ||||    
T  39879480 ccctcatggcatgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacc 39879381  T
Q  172 tttcattccaccgcgaagactcatc 196  Q
    |||| ||||||| |||||| |||||    
T  39879380 tttcgttccaccacgaagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 5863298 - 5863155
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||||| ||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||  |||||||||||||||||| ||||| |    
T  5863298 aagggtgacattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgct 5863199  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| ||| ||||  ||  |||| ||| |||| ||||||||||||    
T  5863198 aacgtgcttgcacgcaaatttcgttctaccgtgaagactcatcg 5863155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 29373556 - 29373415
Alignment:
Q  55 agggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtta 154  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||  |||||||||||| ||||||| || ||  |||||||||||| |||||||  ||    
T  29373556 agggtgacattgcttcaccctcaaggtatgattcaattttcacaacattttctacacactctttctcaattacacaactgacttgagcattggagtccta 29373457  T
Q  155 acatgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    |||||| ||||  |||||||| || |||||| || |||||||    
T  29373456 acatgcctgcatgcacctttcgtttcaccgcaaaaactcatc 29373415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 9867938 - 9868058
Alignment:
Q  73 cctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacct 172  Q
    |||||||||||||||||||||| ||||| ||||||||| ||| || ||||||| ||||||||||||||||||  ||||| |||| | | ||||  |||||    
T  9867938 cctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacct 9868037  T
Q  173 ttcattccaccgcgaagactc 193  Q
    ||| | |||||||||||||||    
T  9868038 ttcgtcccaccgcgaagactc 9868058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 10287546 - 10287667
Alignment:
Q  25 gagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcag 123  Q
    ||||||||||  ||||| || || ||||| |||||| |||||| | ||||||||||||||   |||||||||||||| |||  |||||||||||||||||    
T  10287546 gagacggttaggcttgaagcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcag 10287645  T
Q  124 tttcattactgacttgagcgtt 145  Q
     | |||||||||||||||||||    
T  10287646 atccattactgacttgagcgtt 10287667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 5925455 - 5925585
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||| |     |||||||||| || |||  || ||  | | |||||||| |||||||||||||| |||||||||| |    
T  5925455 aagggtgaacttgcttcaccctcaaggaacacaacacttttcacgacacttcttagactttctctctcagttccattactgacttgatcgttggagtgct 5925554  T
Q  154 aacatgcatgcagacacctttcattccaccg 184  Q
    ||| ||| |||||||||||||| ||||||||    
T  5925555 aacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 16987072 - 16987213
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||| | |||| |    |||||||||||||| |||  |||||||| ||||||| || |||||||| |||||| ||  ||||| |    
T  16987072 aagggtgaacttgcttcacctttaagggacacatcacttttcacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgct 16987171  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    ||| |||  |||  |||||||| |||||||||||||||||||    
T  16987172 aacgtgcccgcatgcacctttcgttccaccgcgaagactcat 16987213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 34854354 - 34854220
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||| ||||||||||  |||    ||||||||||||||  ||  |||||||| |||||||||||||||||| ||||||||||  ||||| |    
T  34854354 aagggtgaacttgtttcaccctcagagtacacatcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgct 34854255  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaa 188  Q
    ||| ||  |||| ||||| ||| ||||||| ||||    
T  34854254 aacgtgtctgcaaacaccgttcgttccaccacgaa 34854220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 43172016 - 43172062
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaac 100  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  43172016 aagggtgaagttgcttcaccctcaatgtatgattcacttttcacaac 43172062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 16204402 - 16204342
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacact 114  Q
    ||||||||| || ||||||||| |||||||| ||||||||||||||| |||| ||||||||    
T  16204402 aagggtgaattttcttcacccttaaggtatggttcacttttcacaacactttatacacact 16204342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 5928990 - 5929088
Alignment:
Q  53 aaagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtg 151  Q
    |||||||||| ||||||||||| ||||| |    |||||||||||||| |||  ||||| || | | |||||| ||||||||||||||| |||||||||    
T  5928990 aaagggtgaatttgcttcacccccaagggacacatcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtg 5929088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 12265105 - 12265156
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacccttt 105  Q
    |||||||||||||||| |||||||||||| |  |||||||||||||| ||||    
T  12265105 aagggtgaacttgcttgaccctcaaggtacgcatcacttttcacaacacttt 12265156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 2226673 - 2226611
Alignment:
Q  135 acttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||||||||||||||||| |||  ||| |||||||||||||| | |||||| ||||| ||||||    
T  2226673 acttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatcg 2226611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 16203833 - 16203768
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttc 119  Q
    ||||||||  || ||||||||| |||||||| ||||||||||| ||| |||| |||||||| ||||    
T  16203833 aagggtgacttttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 4781480 - 4781508
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  4781480 aagggtgaacttgcttcaccctcaaggta 4781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 4813911 - 4813939
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  4813911 aagggtgaacttgcttcaccctcaaggta 4813939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 8122895 - 8123039
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||| ||| |||||||||||||||||||||||||||| |    
T  8122895 aagggtgacattgcttcaccctcaaggtatgattcacttttcacaacgctttcgacatagttttt-tcaatttcattactgacttgagcgttggagtgct 8122993  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtc 199  Q
    ||| ||| |||| ||||||||||||  |||| ||||||||||||||    
T  8122994 aacgtgcctgcatacacctttcattttaccgtgaagactcatcgtc 8123039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 9801064 - 9801201
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||  |||||||||||||| ||| ||||| |    
T  9801064 aagggtgacattgcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtgtt-gagtgct 9801162  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagact 192  Q
    ||| ||| ||||| |||||||| |||||| |||||||||    
T  9801163 aacgtgcttgcaggcacctttcgttccactgcgaagact 9801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 17143729 - 17143869
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||| |    
T  17143729 aagggtgatgttgtttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgct 17143828  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||| ||| |    ||||||||||| |||||| |||||||||    
T  17143829 aacgtgcctaagaacacctttcatcccaccgtgaagactca 17143869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 243
Target Start/End: Complemental strand, 20622519 - 20622328
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctt--tctacacactttttctcagtttcattactgacttgagcgttggagtg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||  |||||||||| ||||||  | |||||||||||||||||||   ||||    
T  20622519 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgacttgagcgtcaaagtg 20622420  T
Q  152 ttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacaccgaagaattatctacc 243  Q
    ||||||||| |||||  ||||||| || ||| ||||||||||| ||  | | | || ||||||||  | |||||||||||  ||||||||||    
T  20622419 ttaacatgcctgcaggaacctttcgtttcactgcgaagactcaacgcggccgtaccggaaatcgttgccgtcacaccgaaacattatctacc 20622328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 1770937 - 1770796
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggt--atgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtg 151  Q
    ||||| |||||||||||| ||||||||   ||||| ||||||||||||| ||||||||||||| || ||||||| ||||||| |||||||||| |||||     
T  1770937 aagggcgaacttgcttcatcctcaaggcgcatgat-cacttttcacaacactttctacacactcttcctcagttccattactaacttgagcgtcggagta 1770839  T
Q  152 ttaacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
     |||||||| |||||||||||||| ||||||||| ||||||||    
T  1770838 ctaacatgcttgcagacacctttccttccaccgcaaagactca 1770796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 2311814 - 2311953
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||  | | || |||| ||||||||||||||| |    
T  2311814 aagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgct 2311913  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||| |   |||||||||||||||||||||| |||||||||    
T  2311914 aacgtatctgcagacacctttcattccaccacgaagactc 2311953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 16704513 - 16704419
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttgga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||  | |||||||||||| |||||||||    
T  16704513 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctacactctctttctcaactccattactgacttcagcgttgga 16704419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 21342267 - 21342405
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||| | ||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| ||| |||||| |||||||||||||||||||| | ||||    
T  21342267 aagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttgtactgtt 21342366  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagact 192  Q
    ||| ||| |||| | ||||||| | |||||| |||||||    
T  21342367 aacgtgcctgcatatacctttcgtcccaccgtgaagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 28715468 - 28715604
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||     ||||||||| |    
T  28715468 aagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccattactgact-----gttggagtgct 28715562  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    ||| ||||||| |||| |||||||| ||||  ||||||||||    
T  28715563 aacgtgcatgcggacaactttcatttcaccttgaagactcat 28715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 30607069 - 30606933
Alignment:
Q  25 gagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcag 123  Q
    ||||| ||||| ||| |||| || ||||| |||||||  ||| ||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||     
T  30607069 gagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtataattcacttttcacaacactttctactcactctttctcaa 30606970  T
Q  124 tttcattactgacttgagcgttggagtgttaacatgc 160  Q
    || |||||||||||||||||||||| || ||||||||    
T  30606969 ttccattactgacttgagcgttggaatgctaacatgc 30606933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 13085073 - 13085189
Alignment:
Q  74 ctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctt 173  Q
    |||||||| |||||||||||||||||  ||||||||| | | |||||||||||||||| |||||||||||||||| || | |||||| |||||||| |||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttggaatgcttacatgcctgcagacatctt 13085172  T
Q  174 tcattccaccgcgaaga 190  Q
    |||| ||||| ||||||    
T  13085173 tcatcccaccacgaaga 13085189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 12516293 - 12516107
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||||||||||||||||    |||||||||||||| |||  |||||| | |||||||||| ||||||| |||||||||| |||||| ||||    
T  12516293 ggtgaacttgcttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaac 12516194  T
Q  157 atgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacaccgaagaattatctacc 243  Q
     ||  ||||| |||||||| || ||||  ||||||| ||||||||| |||  ||| ||||  |  ||||||||||| ||| ||||||    
T  12516193 gtgtctgcaggcacctttcgtttcaccatgaagactgatcgtcgtcgtgctggaagtcgttgccatcacaccgaagcattctctacc 12516107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 431296 - 431436
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||| || |||||||||||||||| |  |||||||||||||| | ||||| || |||| |||||||||| ||||| |||||||||||| | |||| |    
T  431296 aagggtggacatgcttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgct 431395  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||| ||  || || |||||||| ||||||||||||||||||    
T  431396 aacgtgtctgtaggcacctttctttccaccgcgaagactca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 12108468 - 12108377
Alignment:
Q  116 tttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgcc 207  Q
    |||||||||| ||||||| |||||||||| |||||| |||||||||||||  |||||||||||||||| ||| |||||||||||||| ||||    
T  12108468 tttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacgaggactcatcgtcgtcgtgcc 12108377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 194
Target Start/End: Original strand, 17485614 - 17485744
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||||||||||||||  ||||| ||| ||||||  | ||||||||||  |||||| || ||||||||||||||||||||| ||| |||  |||       
T  17485614 ttgcttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgccca 17485713  T
Q  164 cagacacctttcattccaccgcgaagactca 194  Q
    |||||||||||| ||||||||||||||||||    
T  17485714 cagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 12731541 - 12731680
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||||     |||||||||||||| |||  || ||||| |||||||||| ||||| |||| ||||||| |||||  |    
T  12731541 aagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcggagtact 12731640  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||||||  || || |||| ||| ||||||| |||||||||    
T  12731641 aacatggttgtaggcaccattcgttccacctcgaagactc 12731680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 197
Target Start/End: Original strand, 14860079 - 14860222
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  |||| ||| |||||||||| ||||||||| |||||  |  ||||| |    
T  14860079 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgagaatcagagtgct 14860178  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||  ||| ||||  |||||||| ||||||| |||||| ||||||    
T  14860179 aatgtgcctgcaagcacctttcgttccaccacgaagattcatcg 14860222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 21649460 - 21649381
Alignment:
Q  118 tctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||||||| |||||||||||||| |||||| ||| |||| ||| ||||| |||||||| |||||||||||||||||||||    
T  21649460 tctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcg 21649381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 28723768 - 28723848
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttgga 148  Q
    ||||||||| || || |||||||||||||||||  |||||||||||| ||||| |||| ||||| ||||||||||||||||    
T  28723768 ttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttgga 28723848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 13933109 - 13932921
Alignment:
Q  4 aatcatactccgcataatcttgagacggttatccttgacgcacgtctata-aagggtgaacttgcttc---accctcaaggtatgattcacttttcacaa 99  Q
    ||||| || ||||||||||  |||| ||||||  |  |||| |||||||| ||| |||||||||||||   ||||  |||||||||||||||||||||||    
T  13933109 aatcacacgccgcataatccagagatggttatgttgaacgcgcgtctatataagagtgaacttgcttcttcacccctaaggtatgattcacttttcacaa 13933010  T
Q  100 ccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagac 191  Q
    |  |||| || ||| |||| ||||||  |||||||||||||| |||||| || | |||||    ||| |||||||| ||||||| |||||||    
T  13933009 cattttcaacccacattttatcagttcaattactgacttgagtgttggactgcttacatg---tcaggcacctttcgttccaccacgaagac 13932921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 1475783 - 1475722
Alignment:
Q  131 actgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagact 192  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| | |||||| |||||||    
T  1475783 actgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagact 1475722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 7835553 - 7835629
Alignment:
Q  53 aaagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcat 129  Q
    ||||| ||||||||||||| | ||||| || |  |||||||||||||| ||||||||| ||| ||||||||||||||    
T  7835553 aaaggatgaacttgcttcatcatcaagatacgtatcacttttcacaacactttctacatactatttctcagtttcat 7835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 25496049 - 25495962
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgag 141  Q
    |||||||||||||||||||| | ||||||    ||||||||  |||| |||  |||||||| ||||||||||| ||||||||||||||    
T  25496049 aagggtgaacttgcttcacctttaaggtacacatcacttttttcaactcttcttacacactctttctcagtttgattactgacttgag 25495962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 6109650 - 6109735
Alignment:
Q  71 accctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||| | |||||||||||||||||| ||||||  ||| || || ||||||  ||||||||||| || ||||||||| ||||    
T  6109650 accctcaagatgtgattcacttttcacaacactttctttacatttgttttcagttcgattactgacttaagtgttggagtgctaac 6109735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 9007832 - 9007877
Alignment:
Q  130 tactgacttgagcgttggagtgttaacatgcatgcagacacctttc 175  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  9007832 tactgacttgagcgttggagtgttaacgtgcctgcaggcacctttc 9007877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 12252066 - 12251979
Alignment:
Q  87 tcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacaccttt 174  Q
    ||||||||||||||  ||  |||||||| ||||||| |||| ||||||||||||| ||  ||||| |||||||| ||||  |||||||    
T  12252066 tcacttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttt 12251979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 12108530 - 12108502
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  12108530 aagggtgaacttgcttcaccctcaaggta 12108502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 20118957 - 20118985
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  20118957 aagggtgaacttgcttcaccctcaaggta 20118985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 14033 - 13901
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||  |    
T  14033 aagggtgatcttgcttcaccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctttggagtact 13934  T
Q  154 aacatgcatgcagacacctttcattccaccgcg 186  Q
    ||| ||||| ||  |||||||| | ||||||||    
T  13933 aacgtgcattcatgcacctttcgtcccaccgcg 13901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 30681093 - 30680961
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatg 163  Q
    |||||||| |||||||||||||||||||||||||||  | |||||||| || ||| |||||||||||||||||||||||||||||||| |||| ||  ||    
T  30681093 ttgcttcatcctcaaggtatgattcacttttcacaatacattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattg 30680994  T
Q  164 cagacacctttcattccaccgcgaagactcatc 196  Q
    |||||||||||| | ||||||||||||||||||    
T  30680993 cagacacctttcgtcccaccgcgaagactcatc 30680961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 199
Target Start/End: Complemental strand, 18147417 - 18147272
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  |||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||| ||| ||||| |||||||||||||||||||||    
T  18147417 aagggtgacattgcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgttggagtgtt 18147318  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtc 199  Q
    ||| | | | ||| |||||||| || ||||| ||||||||||||||    
T  18147317 aacgttcctacaggcacctttcgtttcaccgagaagactcatcgtc 18147272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 185
Target Start/End: Complemental strand, 33596968 - 33596841
Alignment:
Q  58 gtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaaca 157  Q
    |||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||      
T  33596968 gtgaacttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgagcgttagagtgttaatg 33596869  T
Q  158 tgcatgcagacacctttcattccaccgc 185  Q
    ||| |||||  ||||||| |||||||||    
T  33596868 tgcctgcaggtacctttcgttccaccgc 33596841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 31295515 - 31295661
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||| |||||    |||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||| | |||| |    
T  31295515 aagggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgtcgaagtgct 31295614  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcg 200  Q
    ||||||| ||||| || ||||| ||||||| ||||||||| ||||||    
T  31295615 aacatgcctgcaggcaactttcgttccacctcgaagactcgtcgtcg 31295661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 19305575 - 19305434
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||  |||| |    
T  19305575 aagggtgaccttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagcgtttaagtgct 19305476  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    ||| ||| |  ||  ||||||| ||||||||| |||| ||||    
T  19305475 aacgtgcctctaggaacctttcgttccaccgcaaagattcat 19305434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 15480333 - 15480440
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||| ||| ||||    
T  15480333 gcttcactctcaaggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgagagttcgagtgataacttgcttgca 15480432  T
Q  166 gacacctt 173  Q
    | ||||||    
T  15480433 ggcacctt 15480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 195
Target Start/End: Complemental strand, 34064306 - 34064165
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  |||||||| ||||| ||||||||||||||||||| |||   ||||||    
T  34064306 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaacgtcatagtgtt 34064207  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcat 195  Q
    ||| ||| |||| ||||||||| ||| |||| ||||||||||    
T  34064206 aacgtgcctgcacacacctttcgttctaccgtgaagactcat 34064165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 3404855 - 3404984
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||| || ||| |||||||||  ||| | |||    
T  3404855 cttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccattactgacttaagtgttagagtgttaatgtgcctacag 3404954  T
Q  167 acacctttcattccaccgcgaagactcatc 196  Q
    |||| |||| |  ||  |||||||||||||    
T  3404955 acacatttcgtctcattgcgaagactcatc 3404984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 22572206 - 22572018
Alignment:
Q  4 aatcatactccgcataatcttgagacggttatccttgacgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccc 102  Q
    ||||||||| ||||||| || ||||||||||| ||  |||| || | ||| || ||||||||||||||||||||||| ||||||||||||| |||||| |    
T  22572206 aatcatacttcgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaagatatgattcactttacacaacac 22572107  T
Q  103 tttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagact 192  Q
     ||||||||||| ||| ||| || |||||||||| |||||||   |||| |||| ||| ||||| |||||||  |||||| |||||||||    
T  22572106 cttctacacactcttt-tcaattccattactgacatgagcgtcatagtgctaacgtgcctgcagccaccttttgttccacggcgaagact 22572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 11087613 - 11087473
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| |  |||||| ||| |||||||||| |||||||||||| || ||   |||| |    
T  11087613 aagggtgaacttgtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtcaaagtgct 11087514  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactca 194  Q
    ||  ||  |||||||| ||||| ||||||||||||||||||    
T  11087513 aatgtgtctgcagacagctttcgttccaccgcgaagactca 11087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 20148426 - 20148289
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||  ||||| ||||||| || ||||||| ||||||||| ||||||| |    
T  20148426 aagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgatggagtgct 20148329  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||| ||  ||||  ||| |||| ||||||||| |||||||    
T  20148328 aacgtgtctgcatgcacttttcgttccaccgcaaagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 22184402 - 22184539
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||  ||||| ||||||| || ||||||| ||||||||| ||||||| |    
T  22184402 aagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccattactaacttgagcgatggagtgct 22184499  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactc 193  Q
    ||| ||  ||||  ||| |||| ||||||||| |||||||    
T  22184500 aacgtgtctgcatgcacttttcgttccaccgcaaagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 34572987 - 34573094
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcag 166  Q
    |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||  |||||| |||||||||||||||| ||||  ||  |||||    
T  34572987 cttcaccctcaatgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgagcgttggagtattaatgtgtctgcag 34573086  T
Q  167 acaccttt 174  Q
    ||||||||    
T  34573087 acaccttt 34573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 4251034 - 4251124
Alignment:
Q  64 ttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtta 154  Q
    |||||||||||||||| ||||||| |||||||||||| || ||| |||||| ||||||| ||||||||||||||||| |||||||||||||    
T  4251034 ttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttgaacgttggagtgtta 4251124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 34187397 - 34187272
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    |||||||||||||||||  ||||||||| ||| || |||| |||||||| |||||||||| ||||||||||||||| ||||| ||| |||| ||  ||||    
T  34187397 gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgca 34187299  T
Q  166 gacacctttcattccaccgcgaagact 192  Q
    |||||||||| ||||||||| ||||||    
T  34187298 gacacctttcgttccaccgcaaagact 34187272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 207
Target Start/End: Original strand, 19730571 - 19730723
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    ||||||| ||| || |||  |||||||| |||||||||| ||||| ||||||||||||||||||| |    
T  19730571 aagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgacttgagcgttggagtgct 19730670  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgcc 207  Q
    ||||||| ||||  || ||||  ||||||| |||||||||| || |||| ||||    
T  19730671 aacatgcctgcatgca-ctttacttccaccacgaagactcaacgccgtcgtgcc 19730723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 9292012 - 9292138
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    |||||||||||||||||||||||||||||| || | |||| |||| ||| |||||||||| || |||||||||||||||| | ||| |||| ||| ||||    
T  9292012 gcttcaccctcaaggtatgattcacttttccca-cactttttacatactatttctcagttccaatactgacttgagcgttagcgtgctaacgtgcttgca 9292110  T
Q  166 gacacctttcattccaccgcgaagactc 193  Q
    | |||||||| ||||||||  |||||||    
T  9292111 ggcacctttcgttccaccgtaaagactc 9292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 689856 - 689962
Alignment:
Q  73 cctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacct 172  Q
    |||||||||| ||||||||||||||||| |||| |||||||  |||||||||| |||||||||||||||| ||| |||| |||  | | |||| ||||||    
T  689856 cctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacacct 689955  T
Q  173 ttcattc 179  Q
    |||||||    
T  689956 ttcattc 689962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 12449563 - 12449705
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||| |||||| |||||||||||||||    ||||||| |||||| |||  |||||||| ||| |||| | ||||||||||||||||||  ||||| |    
T  12449563 aagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccattactgacttgagcgtcagagtgct 12449662  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    ||| ||| | |||||||||||| | ||||| ||||||||||||    
T  12449663 aacgtgcctacagacacctttcgtcccaccacgaagactcatc 12449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 16131079 - 16130993
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttga 140  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||  ||||| ||| |||||| ||||||||||||||    
T  16131079 aagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgacttga 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 27860927 - 27861057
Alignment:
Q  53 aaagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    |||||||||||||||||||||||||| |||    |||||||||||||| |||  ||||| || | | |||||| ||||||||||||||| ||| ||||      
T  27860927 aaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttagagtac 27861026  T
Q  153 taacatgcatgcagacacctttcattccacc 183  Q
    |||||||| |||||||||||||  |||||||    
T  27861027 taacatgcctgcagacaccttttgttccacc 27861057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 10115677 - 10115758
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttgg 147  Q
    ||||||||||| ||||||||||||||||||||||  |||| ||| | || ||||||||||||||||||||||||||| ||||    
T  10115677 gcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgagcattgg 10115758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 22497280 - 22497421
Alignment:
Q  56 gggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaa 155  Q
    |||||||||||||||||||||||||||     ||||||||||||| |||| || || || | | || ||| |||||||||||||||||| |||||| |||    
T  22497280 gggtgaacttgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaa 22497379  T
Q  156 catgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    | ||  ||||  |||||||| ||||| |||||||||||||||    
T  22497380 cgtgtctgcaagcacctttcgttccatcgcgaagactcatcg 22497421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 31423817 - 31423894
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcatta 131  Q
    ||||||| ||||||||||||||||||  ||||||||||| ||||||| ||||||||| ||| ||||||||||||||||    
T  31423817 aagggtgcacttgcttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtttcatta 31423894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 9403283 - 9403187
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagt 150  Q
    |||||||||||||||||||||||||||||    ||||||| |||||| |||  |||||||| |||||||||| ||||| |||||||||||| |||||    
T  9403283 aagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgacttgagcgtcggagt 9403187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 9277293 - 9277419
Alignment:
Q  66 gcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgca 165  Q
    |||||||||||||||||||||||||||| | | || |||| |||| ||| |||||||||| || ||||||||||||||||  |||| |||| ||  ||||    
T  9277293 gcttcaccctcaaggtatgattcacttt-ctccacactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgca 9277391  T
Q  166 gacacctttcattccaccgcgaagactc 193  Q
    |  ||||||| ||||||||| |||||||    
T  9277392 ggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 14268524 - 14268440
Alignment:
Q  72 ccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    |||||| | |||||||||||||||| ||| ||||||||||||| | ||| |||| |||||||||||| |||||||||||| ||||    
T  14268524 ccctcacgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttcagcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 17380222 - 17380102
Alignment:
Q  41 acgcacgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttg 139  Q
    ||||||| ||||| |||||||| ||||| ||| ||| |||||| ||||||||||||||||| |||| | |||||| ||||||||||  ||||||||||||    
T  17380222 acgcacgcctatataagggtgaccttgcgtcaacctgaaggtaagattcacttttcacaacactttattcacactctttctcagttctattactgacttg 17380123  T
Q  140 agcgttggagtgttaacatgc 160  Q
      | |||||||  ||||||||    
T  17380122 gacattggagtactaacatgc 17380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 18566765 - 18566685
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgact 137  Q
    ||||||||||| ||||||||||||||   ||||||||| ||||| ||||||||||| | |||||||||| |||||||||||    
T  18566765 ggtgaacttgcctcaccctcaaggtagacttcactttttacaacgctttctacacaatctttctcagttccattactgact 18566685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 14080567 - 14080505
Alignment:
Q  81 tatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcag-ttcattactaacttgagcgt 14080505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 16343626 - 16343547
Alignment:
Q  118 tctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    |||||||| ||||||||||||||| ||||||||| |||| ||| ||||| |||| |||  ||||| ||||||||||||||    
T  16343626 tctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatcg 16343547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 19277056 - 19277135
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattact 133  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  |||||||| ||||||| || |||||||    
T  19277056 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattact 19277135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 23768304 - 23768161
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||| |||||  |||||    ||||||| |||||| |||  |||||||| | | ||||||  ||||||||||||||| |||||||| |    
T  23768304 aagggtgaacttgctttacccttgaggtacacatcactttccacaacacttcttacacactatctttcagttcaattactgacttgagcattggagtgct 23768205  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    || |||| || | ||||| ||| ||||||  |||||||||||||    
T  23768204 aatatgcctgtaaacacccttcgttccacgccgaagactcatcg 23768161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 25008398 - 25008472
Alignment:
Q  81 tatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||| | || | |||| |||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  25008398 tatgattcactttaccca-cactttttacacactctttctcaattccattactgacttgagcgttggagtgttaac 25008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 12203631 - 12203683
Alignment:
Q  67 cttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttc 119  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||    
T  12203631 cttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 12424294 - 12424422
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||| ||||||     ||||||||||||| |||| || ||  | | |||||||| ||||||||||||||  || | |||| |    
T  12424294 aagggtgaacttgcttcacccttaaggtacacaacacttttcacaacactttttagactttctctctcagttccattactgacttgattgtcgtagtgct 12424393  T
Q  154 aacatgcatgcagacacctttcattccac 182  Q
    ||| ||| ||||| |||||||| ||||||    
T  12424394 aacgtgcctgcaggcacctttcgttccac 12424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 19331695 - 19331799
Alignment:
Q  89 acttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcgaa 188  Q
    ||||| |||||| ||||||| || || ||||| |||| |||||||||||| ||||| |||||  |||| | | ||||  |||||||| ||||||||||||    
T  19331695 actttacacaacactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaa 19331794  T
Q  189 gactc 193  Q
    |||||    
T  19331795 gactc 19331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 12487967 - 12488122
Alignment:
Q  46 cgtctata-aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    |||||||| |||||||||||||  |||||||||| |||    |||||||||||||| ||   |||||||| | | | ||||  |||| |||||| |||||    
T  12487967 cgtctatataagggtgaacttgtatcaccctcaatgtacacatcacttttcacaacactacttacacactctattttagttctattattgacttcagcgt 12488066  T
Q  145 tggagtgttaacatgcatgcagacacctttcattccaccgcgaagactcatcgtcg 200  Q
    | ||||| |||| ||||||||  |||| ||| ||||||  ||||||||||||||||    
T  12488067 tagagtgctaacgtgcatgcatgcacccttcgttccacaacgaagactcatcgtcg 12488122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 13823361 - 13823459
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||||||||||||||||     ||||||| |||||  || |||   | |||||||||||| |||||||||||||| |||||||||| ||||    
T  13823361 ggtgaacttgcttcaccctcaaggtacacaacactttttacaacaatt-ctaaggattttttctcagttccattactgacttgatcgttggagtgctaac 13823459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 27772545 - 27772584
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttt 93  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  27772545 aagggtgaccttgcttcaccttcaaggtatgattcacttt 27772584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 14184536 - 14184564
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  14184536 aagggtgaacttgcttcaccctcaaggta 14184564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 8571 - 8696
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaga 167  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| | |||| |||| ||| |||| |    
T  8571 ttcacccttaaggtatgattcacttttcacaacactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtgc-tgcaaa 8669  T
Q  168 cacctttcattccaccgcgaagactca 194  Q
    ||||||| |||||||||| ||||||||    
T  8670 caccttttattccaccgcaaagactca 8696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 15410 - 15512
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||||||||||| |||||| |||||| |    
T  15410 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgtcggagtgct 15509  T
Q  154 aac 156  Q
    |||    
T  15510 aac 15512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 95790 - 95924
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||| |||||||||||| |||| |    
T  95790 aagggtgacgttgcttcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggt 95889  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaa 188  Q
    ||| ||| |||||  ||||||  | ||||||||||    
T  95890 aacgtgcctgcaggaaccttttgtcccaccgcgaa 95924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 6409 - 6289
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| | | |||| |    
T  6409 aaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagcttcgaagtgct 6310  T
Q  154 aacatgcatgcagacaccttt 174  Q
    ||| ||| |||| ||||||||    
T  6309 aacgtgcctgcaaacaccttt 6289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 7982 - 7853
Alignment:
Q  68 ttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaga 167  Q
    ||||| |||||  |||||||||||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||| ||||| |||| ||| | ||      
T  7982 ttcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatg 7883  T
Q  168 cacctttcattccaccgcgaagactcatcg 197  Q
    |||||||| |||||||| ||||||||||||    
T  7882 cacctttccttccaccgtgaagactcatcg 7853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 29286 - 29431
Alignment:
Q  82 atgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattcca 181  Q
    ||||||||||||||||||| |||||||||| |||   || | |||||||||||||||||||||||||||| |||||||  | ||  |||||||| |||||    
T  29286 atgattcacttttcacaacactttctacactcttc--cttattttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttcca 29383  T
Q  182 ccgcgaagactcatcgtcgtcatgccagaaatcgtcactgtcacaccg 229  Q
    ||||||||||||||| ||||| | |||||||  ||||| |||| ||||    
T  29384 ccgcgaagactcatcatcgtcgtaccagaaactgtcaccgtcataccg 29431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 22997 - 22854
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    |||||||||||||| |||  |||||||  |||||||||| ||||||||||||||||||  ||||| |    
T  22997 aagggtgaacttgcttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgct 22898  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcg 197  Q
    ||| |||  |||| |||||||| | |||| |||||||| |||||    
T  22897 aacgtgcccgcaggcacctttcgtcccactgcgaagacccatcg 22854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 10898 - 11026
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    |||||||||| |||||||||||||||    |||||||||||||| |||  |||||||| | | |||||| ||||| ||||||||||||||||||| ||||    
T  10898 ggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaac 10997  T
Q  157 atgcatgcagacacctttcattccaccgc 185  Q
     ||| |||| ||||||||  |||||||||    
T  10998 gtgcctgcatacaccttttgttccaccgc 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 68782 - 68882
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||  | ||| |||||||||| ||||||| ||||||||||||||||| |    
T  68782 aagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactctttctcagttccattactaacttgagcgttggagtgct 68879  T
Q  154 aac 156  Q
    |||    
T  68880 aac 68882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 4404 - 4533
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||||||||||||||||||||||||||||    ||| |||||| ||| |||  ||||| || | | |||||||||||| ||||||||||||||||||| |    
T  4404 aagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcattagtgacttgagcgttggagtgct 4503  T
Q  154 aacatgcatgcagacacctttcattccacc 183  Q
    ||| ||| |||||||||||||| |||||||    
T  4504 aacgtgcttgcagacacctttcgttccacc 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 379825 - 379681
Alignment:
Q  56 gggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaa 155  Q
    |||||||||||||||||||||||||||    |||||||||||||| |||  |||||||| |||||||||| |||||||||||| || ||   |||| |||    
T  379825 gggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaa 379726  T
Q  156 catgcatgcagacacctttcattccaccgcgaagactcatcgtcg 200  Q
    | ||| |  |  |||||||| ||||||||||||||||||||||||    
T  379725 cgtgcctagatgcacctttcgttccaccgcgaagactcatcgtcg 379681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 120991 - 121075
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgactt 138  Q
    ||||||||| |||||||||||||||||||    |||||||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  120991 aagggtgaatttgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgactt 121075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 222 - 325
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgat-tcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    |||||||||||||||||||||||||||||   | |||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||| ||||||     
T  222 aagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacacttcttacacactctttctcagttccattactgacttgagcgtcggagtgc 321  T
Q  153 taac 156  Q
    ||||    
T  322 taac 325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 10714 - 10840
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||             ||||| |||||||||||||| ||| |||||| ||||    
T  10714 ggtgaacttgcttcaccctcgaggcatgattcacttttcacaactctttct-------------cagttccattactgacttgaacgtcggagtgctaac 10800  T
Q  157 atgcatgcagacacctttcattccaccgcgaagactcatc 196  Q
    |||| | |||||||||||||||||||| ||||||||||||    
T  10801 atgcctacagacacctttcattccaccacgaagactcatc 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 215383 - 215262
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    |||| ||||||||||||||||||||||||     ||||||||||||| |||  |||||||| | | ||||||||||||||||||||||||||||| || |    
T  215383 aaggatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgct 215284  T
Q  154 aacatgcatgcagacacctttc 175  Q
    ||| ||| |||||||| |||||    
T  215283 aacgtgcctgcagacaactttc 215262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 73785 - 73939
Alignment:
Q  57 ggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaac 156  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||| ||| |||  | ||||||| | ||||||||  ||||| ||||    
T  73785 ggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcactctttttcaaatccattactaatttgagcgtcagagtgctaac 73884  T
Q  157 atgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaa 211  Q
    |||| || |  |||||||  ||||||||| ||| |||| | ||| | ||||||||    
T  73885 atgcctgaatgcaccttttgttccaccgcaaaggctcaacatcgccgtgccagaa 73939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 165
Target Start/End: Complemental strand, 40908 - 40796
Alignment:
Q  53 aaagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgt 152  Q
    ||||||||||||||||||||||||||||||    |||||||||| ||| ||| |||||| || | | |||||| ||| |||||||||||||||||||||     
T  40908 aaagggtgaacttgcttcaccctcaaggtacacatcacttttcataacacttcctacactctctctttcagttccatcactgacttgagcgttggagtgc 40809  T
Q  153 taacatgcatgca 165  Q
    |||| ||| ||||    
T  40808 taacgtgcctgca 40796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 6840 - 6930
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgt 144  Q
    ||||||||||||| |||||||||||||||    |||||||||||||| |||  ||||||||  |||||||||||| |||||||||||||||    
T  6840 aagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactcgttctcagtttcaatactgacttgagcgt 6930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 20510 - 20618
Alignment:
Q  87 tcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcagacacctttcattccaccgcg 186  Q
    |||||||||| |||  |||||||||||| |||||||||| | ||| ||||||||||||  ||||| |||||||  || |  |||||||| ||||||||||    
T  20510 tcacttttcataacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcgttccaccgcg 20609  T
Q  187 aagactcat 195  Q
    ||| |||||    
T  20610 aagcctcat 20618  T

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Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 202
Target Start/End: Original strand, 21598 - 21746
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||| |||||||||||||||||||    ||||||| |||||| |||  || ||||| | | ||||||||| |||||||||||| ||||||||| |    
T  21598 aagggtgaatttgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgagtgttggagtgct 21697  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtc 202  Q
    ||| |||  |||| |||  ||| |||||| ||  |||||||||| ||||    
T  21698 aacgtgcccgcaggcacacttcgttccactgcagagactcatcgccgtc 21746  T

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Target: scaffold0464 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 11623 - 11470
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgtt 153  Q
    ||||||||||||| ||||||||||||||   || ||||||||||||| |||   | ||||| |||||||||| ||||| |||  |||||||||||||| |    
T  11623 aagggtgaacttggttcaccctcaaggtcacat-cacttttcacaacactt---atacactctttctcagttccattaatgaggtgagcgttggagtgct 11528  T
Q  154 aacatgcatgcagacacctttcattccaccgcgaagactcatcgtcgtcatgccagaa 211  Q
    ||||||  || || |||| ||| |||||||  |||||||| ||| || | ||||||||    
T  11527 aacatggttgtaggcaccattcgttccaccttgaagactcttcgccgccgtgccagaa 11470  T

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Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 35353 - 35224
Alignment:
Q  66 gcttcaccctcaaggtatgattcactttt-cacaaccctttctacacactttttctcagtttcattactgacttgagcgttggagtgttaacatgcatgc 164  Q
    ||||| ||||||| | ||||||||||||| |||||| ||||| ||||||| |||||||||| | ||||||||||||| ||  ||||| |||| ||| |||    
T  35353 gcttccccctcaaaggatgattcactttttcacaacactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgc 35254  T
Q  165 agacacctttcattccaccgcgaagactca 194  Q
    |  ||| |||| || |||  ||||||||||    
T  35253 aagcacatttcgttgcactacgaagactca 35224  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 42359 - 42331
Alignment:
Q  54 aagggtgaacttgcttcaccctcaaggta 82  Q
    |||||||||||||||||||||||||||||    
T  42359 aagggtgaacttgcttcaccctcaaggta 42331  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 69281 - 69333
Alignment:
Q  131 actgacttgagcgttggagtgttaacatgcatgcagacacctttcattccacc 183  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||  |||||||    
T  69281 actgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttccacc 69333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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