View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_16 (Length: 246)
Name: NF2142_high_16
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15262780 - 15262550
Alignment:
| Q |
1 |
acatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15262780 |
acatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcctctcaatt |
15262681 |
T |
|
| Q |
101 |
atgctattaagataagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaagaccgaaaccggaacaatttaagcatcctaaaa |
200 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15262680 |
atgccattaagacaagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaagaccgaaaccggaacaatttaagcatcctaaaa |
15262581 |
T |
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| Q |
201 |
ccaaaccattctcataataaactgaaggaac |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15262580 |
ccaaaccattctcataataaactgaaggaac |
15262550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 15287653 - 15287793
Alignment:
| Q |
8 |
ccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaattatgctat |
107 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| || | |||| ||| | |||||||||||||||||||||||| |||| |
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| T |
15287653 |
ccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttcctttagcaactttcctctcaattatactat |
15287752 |
T |
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| Q |
108 |
taagataagtccttaaagcctttcttaatggaacgtaaaaa |
148 |
Q |
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| T |
15287753 |
taagggtagtcctcaaagcctttcttaatggaacataaaaa |
15287793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 15284261 - 15284106
Alignment:
| Q |
12 |
ccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaattatgctattaag |
111 |
Q |
| |
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||||||||||| |||| |||||||||| |||||| | ||| | ||||| || ||||| ||||| |||| | | |||||||||||||||||||||||| |
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| T |
15284261 |
ccttatcccaaccaccttcaaaatgagtaggtgagtatgttctcacaatcacatcaattttattccctttaaccattttcctctcaattatgctattaag |
15284162 |
T |
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| Q |
112 |
ataagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
167 |
Q |
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|||||||||||||||||| | ||||| ||||| || |||||| | ||||||| |
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| T |
15284161 |
ggtagtccttaaagcctttctcattggaatataaaatccaatatcactataattaa |
15284106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 15265594 - 15265670
Alignment:
| Q |
95 |
tcaattatgctattaagataagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaagacc |
171 |
Q |
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||||||||||||||||| |||||||||||||||||||||| | | ||||| || || ||||||||||||||||| |
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| T |
15265594 |
tcaattatgctattaagggtagtccttaaagcctttcttaatacatcataaaaccctatttcagtgtaattaagacc |
15265670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 44248288 - 44248454
Alignment:
| Q |
1 |
acatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaatt |
100 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||| |||||| | ||| | |||||||| |||||||||||| | | ||| |||| |||||||| |
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| T |
44248288 |
acatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaatt |
44248387 |
T |
|
| Q |
101 |
atgctattaagataagtccttaaagcctttcttaatggaacgtaaaaaccgatatcagtgtaattaa |
167 |
Q |
| |
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||||||||||| |||||||||||||||||| | |||||| ||||| || |||||||| ||||||| |
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| T |
44248388 |
atgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtataattaa |
44248454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 51383446 - 51383326
Alignment:
| Q |
12 |
ccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaattatgctattaag |
111 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||| ||| | ||||| || | ||||||||| |||| |||||||||| |||||||| |||||||| |
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| T |
51383446 |
ccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatactattaag |
51383347 |
T |
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| Q |
112 |
ataagtccttaaagcctttct |
132 |
Q |
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| T |
51383346 |
agtagtccttaaagcctttct |
51383326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 11807217 - 11807362
Alignment:
| Q |
12 |
ccttatcccaatcaccatcaaaatgagaaggtgaaaaagtttttacaattactccaattccattccttttagcaactttcctctcaattatgctattaag |
111 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||| ||| | ||||| || ||||| |||||| |||| | | |||||||||||||||| ||||||| |
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| T |
11807217 |
ccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcctctcaattatggtattaag |
11807316 |
T |
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| Q |
112 |
ataagtccttaaagcctttcttaatggaacgtaaaaaccgatatca |
157 |
Q |
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| T |
11807317 |
ggcaatccttaaagcctttctcattggaacataaaatccaatatca |
11807362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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