View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_21 (Length: 238)
Name: NF2142_high_21
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 3962613 - 3962783
Alignment:
| Q |
52 |
cacaaaagtgatagcaatggctatttactctattggaagagaaattcaccttttttagtatcacttcatttctattatttaaacagcaaagtataagatg |
151 |
Q |
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| T |
3962613 |
cacaaaagtgatagcaatggctatttactctattggaagagaaattcaccatttttagtatcaattcatttctattatttaaacagcaaagtataagatg |
3962712 |
T |
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| Q |
152 |
cacaagcacaatgtgatattatatgaagcatgaatactttttggattagacgtgtcatggtgtttgacatg |
222 |
Q |
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| T |
3962713 |
cacaagcacaatgtgatattatatggagtatgaatacttcttggattaaacgtgtcatggtgtttgacatg |
3962783 |
T |
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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 13998126 - 13997952
Alignment:
| Q |
42 |
cagttatgtccacaaaagtgatagcaatggctatttactctattggaagagaaattcaccttttttagtatcacttcatttctattatttaaacagcaaa |
141 |
Q |
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| T |
13998126 |
cagttatgtccacaaaagtgatagcaatggctatttactctattggaagagaaattcaccatttttagtatcacttcatttctattatttaaacagcaaa |
13998027 |
T |
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| Q |
142 |
gtataagatgcacaagcacaatgtgatattatatgaagcatgaatactttttggattagacgtgtcatggtgtttgacatg |
222 |
Q |
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| T |
13998026 |
gtataagatgcacaagcacaatgtgatattatatggagtatga------cttggattagacgtgtcatggtgtttgacatg |
13997952 |
T |
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