View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_24 (Length: 220)
Name: NF2142_high_24
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 37092140 - 37091935
Alignment:
| Q |
1 |
ttcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgt |
100 |
Q |
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| T |
37092140 |
ttcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgt |
37092041 |
T |
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| Q |
101 |
tcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaacagccgc |
200 |
Q |
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| T |
37092040 |
tcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaacagccgc |
37091941 |
T |
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| Q |
201 |
cctatg |
206 |
Q |
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|||||| |
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| T |
37091940 |
cctatg |
37091935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 17346262 - 17346433
Alignment:
| Q |
7 |
ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca |
106 |
Q |
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| T |
17346262 |
ataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca |
17346361 |
T |
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| Q |
107 |
agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg |
178 |
Q |
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| T |
17346362 |
agtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatgg |
17346433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 17137529 - 17137361
Alignment:
| Q |
7 |
ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca |
106 |
Q |
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| T |
17137529 |
ataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttca |
17137433 |
T |
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| Q |
107 |
agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg |
178 |
Q |
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| T |
17137432 |
agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatgg |
17137361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 55295338 - 55295414
Alignment:
| Q |
21 |
cagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttactta |
97 |
Q |
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| T |
55295338 |
cagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcactta |
55295414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 8571971 - 8571806
Alignment:
| Q |
9 |
aggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaag |
108 |
Q |
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||||||||||| |||||||| ||||| |||| |||||||||| | |||||||| ||||| |||||||| || ||||||| || || | ||||||| |
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| T |
8571971 |
aggaatggagtccagcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaag |
8571872 |
T |
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| Q |
109 |
taaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggtt |
174 |
Q |
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| T |
8571871 |
taaaagatcaaattggtagtttctattatttcccatctcttgcattccacaaagctgctggtggtt |
8571806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 6796801 - 6796848
Alignment:
| Q |
33 |
aattcatggcaagatggagtatatggaacaaactgtccaattccacca |
80 |
Q |
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| T |
6796801 |
aattcatggcaagatggagtactgggaacaaactgtcctattccacca |
6796848 |
T |
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