View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_4 (Length: 442)
Name: NF2142_high_4
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 84 - 428
Target Start/End: Original strand, 36142453 - 36142797
Alignment:
| Q |
84 |
gtggactaagttacatacagtgatcagccatgtcgaaggtagataagccggaatcagcataccggagcatagcttcaacggcgtcgtctcgatcaatcct |
183 |
Q |
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| T |
36142453 |
gtggactaagttacatacagtgatcagccatgtcgaaggtagataagccggaatcagcataccggagcatagcttcaacggcgtcgtctcgatcaatcct |
36142552 |
T |
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| Q |
184 |
cccccaaccaccacttgtctgccacattccattaagaactctacatatttccaatgaatcgttcccgttactcagtttcactctctgctgattctcaacc |
283 |
Q |
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| T |
36142553 |
cccccaaccaccacttgtctgccacattccattaagaactctacatatttccaatgaatcgttcccgttactcagtttcactctctgctgattctcaacc |
36142652 |
T |
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| Q |
284 |
gtgttcgtagcacatgtgctcaaatcaccactgcatcgaattcgaatcaatcttgcgctgttggttgtttgtgagtgggggttgattcttgatgagctgt |
383 |
Q |
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| T |
36142653 |
gtgttcgtagcacatgtgctcaaatcaccactgcatcgaattcgaatcaatcttgcgctgttggttgtttgtgagtggggattgattcttgatgagctgt |
36142752 |
T |
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| Q |
384 |
tcaagcgagtgaaagtggagaataggttgtggcttgatataactg |
428 |
Q |
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| T |
36142753 |
tgaagcgagtgaaagtggagaataggttgtggcttgatataactg |
36142797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 36142382 - 36142414
Alignment:
| Q |
13 |
aaggtaaatatgcatccacgtcatcatggagga |
45 |
Q |
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| T |
36142382 |
aaggtaaatatgcatccacgtcatcatggagga |
36142414 |
T |
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