View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_high_8 (Length: 383)
Name: NF2142_high_8
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 15263205 - 15262929
Alignment:
| Q |
11 |
cagagaatgaacataataaacataatctttctatggaaatatttgattaataaattaacaagctaagaggaatgaatgtctcactcttcactccttggtt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15263205 |
cagagaatgaacataataaacataatctttctatggaaagattagattaataaattaacaagctaagaggaatgaatgtctcactcttcactccttggtt |
15263106 |
T |
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| Q |
111 |
gtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15263105 |
gtcccttccaatcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacata |
15263006 |
T |
|
| Q |
211 |
ctttggaacaccgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15263005 |
ctttggaacaccgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaatt |
15262929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 127 - 383
Target Start/End: Complemental strand, 15284578 - 15284322
Alignment:
| Q |
127 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
226 |
Q |
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|
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || || |
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| T |
15284578 |
cttcttcatcatctccaacaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccattt |
15284479 |
T |
|
| Q |
227 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgttatatcaagcaccgccaaattaaatcccaattgtt |
326 |
Q |
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|| || |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||| |
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| T |
15284478 |
gcaaatggaaaaggattcatataagcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtt |
15284379 |
T |
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| Q |
327 |
cagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcat |
383 |
Q |
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|||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
15284378 |
tagcttttgccctagcattttccacttcctctatctcaacacttcttatcttagcat |
15284322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 15287332 - 15287503
Alignment:
| Q |
122 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
221 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |
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| T |
15287332 |
tcccacctcttcatcatctctacaaaaatctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactc |
15287431 |
T |
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| Q |
222 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgtta |
293 |
Q |
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| || || || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
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| T |
15287432 |
catttgcaaatggaaaaggattcatgtaaggacctggatgaccatctggtctcaataatgccaatttagtta |
15287503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 15256661 - 15256839
Alignment:
| Q |
122 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
221 |
Q |
| |
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||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
15256661 |
tcccatttcttcataatctccagaaaaatctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaacac |
15256760 |
T |
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| Q |
222 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgttatatcaag |
300 |
Q |
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| || || || |||||||| | ||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
15256761 |
cattggcaaatggaaaagggtacatataaggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 122 - 293
Target Start/End: Original strand, 15265186 - 15265357
Alignment:
| Q |
122 |
tcccacttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacac |
221 |
Q |
| |
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||||| ||||| || || |||| ||| ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||| | | |||| | |
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| T |
15265186 |
tcccatttctttataatttctaaaaatatctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaaccc |
15265285 |
T |
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| Q |
222 |
cgttcgcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgtta |
293 |
Q |
| |
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| || ||| |||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
15265286 |
cattaaagaatggaaaaggattcatataaggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 127 - 383
Target Start/End: Complemental strand, 51383763 - 51383507
Alignment:
| Q |
127 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
226 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |
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| T |
51383763 |
cttcttcatgatctccaaaaaaatctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccatta |
51383664 |
T |
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| Q |
227 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgttatatcaagcaccgccaaattaaatcccaattgtt |
326 |
Q |
| |
|
|| || ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51383663 |
gcaaatggaaaaggattcatgtaggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctccaaattaaatcccaattgtt |
51383564 |
T |
|
| Q |
327 |
cagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcat |
383 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51383563 |
cagcttttgacttagcatttttcacttcctctatctcaatacttcttatctcagcat |
51383507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 128 - 383
Target Start/End: Original strand, 44247983 - 44248238
Alignment:
| Q |
128 |
ttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttcg |
227 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| | || | |
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| T |
44247983 |
ttcttcatcatctgcaaaaaaatctcattccaaatatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttag |
44248082 |
T |
|
| Q |
228 |
cgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgttatatcaagcaccgccaaattaaatcccaattgttc |
327 |
Q |
| |
|
| || |||||||||||||| ||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| | ||||| |
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|
| T |
44248083 |
caaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttg |
44248182 |
T |
|
| Q |
328 |
agcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcat |
383 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
44248183 |
agcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcat |
44248238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 127 - 377
Target Start/End: Original strand, 11806900 - 11807150
Alignment:
| Q |
127 |
cttcttcatcatctctagaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttc |
226 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||| |||| |||||||| || |
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|
| T |
11806900 |
cttcttcatcatctccaaaaaaatctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgtttta |
11806999 |
T |
|
| Q |
227 |
gcgaacggaaaaggattcatgtaagcacctggatgaccatctggtctcaacaatgccaattttgttatatcaagcaccgccaaattaaatcccaattgtt |
326 |
Q |
| |
|
|| || |||||||||| | | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| |
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|
| T |
11807000 |
gcaaatggaaaaggatacctataagctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtt |
11807099 |
T |
|
| Q |
327 |
cagcttttgccttagcattttttacttcctctatctcaatacttcttatct |
377 |
Q |
| |
|
|| |||| |||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11807100 |
tagatttttccttagcattttcagcttcctctatctccatacttcttatct |
11807150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 48391719 - 48391667
Alignment:
| Q |
152 |
tcattccaagtatctataggtcctggcaaacaccaatgaacacaatcattttg |
204 |
Q |
| |
|
|||||||||| ||| || |||||||||||| ||||||| | |||||||||||| |
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|
| T |
48391719 |
tcattccaagaatcgattggtcctggcaaataccaatgtaaacaatcattttg |
48391667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
156 |
tccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
201 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 6543659 - 6543709
Alignment:
| Q |
151 |
ctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
201 |
Q |
| |
|
||||||||| ||||| | |||||| || ||||||||||||||||||||||| |
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| T |
6543659 |
ctcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcatt |
6543709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 4835980 - 4836038
Alignment:
| Q |
143 |
agaaaaatctcattccaagtatctataggtcctggcaaacaccaatgaacacaatcatt |
201 |
Q |
| |
|
|||||||||||||| |||||| | ||| ||||||| ||||||||||||||||||||| |
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|
| T |
4835980 |
agaaaaatctcattaatagtatcaacaggccctggcatacaccaatgaacacaatcatt |
4836038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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