View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_low_12 (Length: 273)
Name: NF2142_low_12
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 8176701 - 8176524
Alignment:
| Q |
81 |
tagagttagcactaagacgctcaagttaataaaatgaggaaggaaagtgtgcgaaaagtggtgaaaatgtcatcgtatctcaagtgtggcgtggagccac |
180 |
Q |
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| T |
8176701 |
tagagttagcattaagatgctcaagttaatgaaatgaggaaggaaagtgtgcgaaaagtggtgaaaatgtcatcgtacctcaagtgtggcgtggagccac |
8176602 |
T |
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| Q |
181 |
acttatatagcatagcacaaatgtaactaactatgtaatgc-ccgacgagatatgcaggagattgtttgagatcatat |
257 |
Q |
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| T |
8176601 |
acttatatagcatagcacaactgtaactaactatgtaatgcggcgacgagatatgcaggagattgtttgagatcatat |
8176524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8176886 - 8176807
Alignment:
| Q |
1 |
ttataaatgagagagatcatttgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
80 |
Q |
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| T |
8176886 |
ttataaatgagagagatcattcgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
8176807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 45046467 - 45046504
Alignment:
| Q |
112 |
aaatgaggaaggaaagtgtgcgaaaagtggtgaaaatg |
149 |
Q |
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| T |
45046467 |
aaatgaggaaggaaaatgtgcgaaaagtgatgaaaatg |
45046504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 16687719 - 16687675
Alignment:
| Q |
112 |
aaatgaggaaggaaagtgtgcgaaaagtggtgaaaatgtcatcgta |
157 |
Q |
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| T |
16687719 |
aaatgagga-ggaaagtgtgcgaaaagtggtgaaattgtcatcgta |
16687675 |
T |
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