View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_low_17 (Length: 245)
Name: NF2142_low_17
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7286806 - 7287045
Alignment:
| Q |
1 |
tttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgt |
100 |
Q |
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| T |
7286806 |
tttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttactctttgttaattttttgt |
7286905 |
T |
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| Q |
101 |
gaaatattatttttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaaattgtttgttccattgaactggttgccaa |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||| |
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| T |
7286906 |
gaaatattatttttaacttcacatggtgtcctgatagcttcttggttttggttaaactccagcctagttaaatagtttgttcaattgaagtggttgccaa |
7287005 |
T |
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| Q |
201 |
caaaagggcttccttggattgttcttttgtaagttctctg |
240 |
Q |
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| T |
7287006 |
caaaagggcttccttgggttgttcttttgtaagttctctg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8357393 - 8357227
Alignment:
| Q |
1 |
tttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgt |
100 |
Q |
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|||| ||||||||||||||||||| ||| | |||||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||||||| |||| | |
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| T |
8357393 |
tttgcagtttcaatatattcatttcaggaaacattccaatgtgaaatcaagttacactttagggactataattgtggtttgctctttgttaa-ttttcat |
8357295 |
T |
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| Q |
101 |
gaaatattatttttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaa |
171 |
Q |
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| T |
8357294 |
g--acattatttttaactccctctggtgtactcatagcttcttggatttggttaaact-tagcctagttaa |
8357227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 8365807 - 8365653
Alignment:
| Q |
13 |
atatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttttgtgaaatattattt |
112 |
Q |
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|||||||||||| |||||||||||||||||| ||| | ||||||| || |||| |||||| |||||||||||||| |||||||| | | ||||||| |
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| T |
8365807 |
atatattcatttcagggaccattccaatgtgaaatcaagttacactttcgggactataatcgtggtttgctctttcttaatttt---tacgacattattt |
8365711 |
T |
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| Q |
113 |
ttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaa |
171 |
Q |
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|||||| ||| |||||| | ||||||||||| |||||||||||| ||||||||||| |
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| T |
8365710 |
ttaactccacctggtgtactcgtagcttcttggaattggttaaactc-agcctagttaa |
8365653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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