View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2142_low_2 (Length: 521)

Name: NF2142_low_2
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2142_low_2
NF2142_low_2
[»] chr5 (21 HSPs)
chr5 (31-503)||(14820297-14820745)
chr5 (148-318)||(19343551-19343721)
chr5 (169-318)||(39058477-39058626)
chr5 (148-318)||(26724110-26724281)
chr5 (168-296)||(38948544-38948672)
chr5 (157-318)||(5159485-5159646)
chr5 (148-325)||(36235746-36235923)
chr5 (148-308)||(16089694-16089854)
chr5 (267-325)||(5459043-5459101)
chr5 (159-235)||(15070000-15070076)
chr5 (190-318)||(38607295-38607423)
chr5 (219-318)||(21114568-21114667)
chr5 (153-228)||(30403572-30403647)
chr5 (148-202)||(6502282-6502336)
chr5 (252-318)||(15069930-15069996)
chr5 (166-266)||(22860975-22861072)
chr5 (255-296)||(4294818-4294859)
chr5 (148-277)||(5459137-5459265)
chr5 (265-318)||(16089653-16089706)
chr5 (262-318)||(1298894-1298950)
chr5 (86-114)||(15070125-15070153)
[»] chr8 (24 HSPs)
chr8 (159-318)||(39344582-39344741)
chr8 (148-318)||(12596853-12597023)
chr8 (159-318)||(24916049-24916206)
chr8 (173-318)||(26938628-26938773)
chr8 (159-318)||(26938876-26939032)
chr8 (148-270)||(32796980-32797102)
chr8 (148-296)||(10467482-10467631)
chr8 (170-318)||(33038214-33038362)
chr8 (148-318)||(42023985-42024154)
chr8 (155-318)||(17156980-17157146)
chr8 (203-318)||(17153537-17153652)
chr8 (159-318)||(17219713-17219875)
chr8 (167-318)||(24292198-24292349)
chr8 (212-316)||(16483745-16483848)
chr8 (198-318)||(8026016-8026136)
chr8 (262-318)||(8026216-8026272)
chr8 (212-287)||(30743922-30743997)
chr8 (232-278)||(2414910-2414956)
chr8 (219-318)||(43651359-43651458)
chr8 (245-295)||(41828016-41828066)
chr8 (292-329)||(41590719-41590756)
chr8 (258-318)||(12911025-12911085)
chr8 (234-318)||(26736027-26736111)
chr8 (262-318)||(26938540-26938596)
[»] chr6 (17 HSPs)
chr6 (167-318)||(10516588-10516738)
chr6 (173-318)||(3807068-3807213)
chr6 (148-318)||(6197810-6197979)
chr6 (148-318)||(17957029-17957199)
chr6 (188-315)||(3336025-3336152)
chr6 (212-318)||(25042897-25043002)
chr6 (212-318)||(4405838-4405943)
chr6 (148-248)||(4254536-4254636)
chr6 (210-318)||(12611794-12611902)
chr6 (195-318)||(24672269-24672392)
chr6 (187-310)||(30465195-30465318)
chr6 (148-208)||(14198537-14198597)
chr6 (232-315)||(4409537-4409619)
chr6 (219-318)||(10311637-10311736)
chr6 (244-295)||(17141881-17141932)
chr6 (77-111)||(34187672-34187706)
chr6 (148-208)||(14897305-14897365)
[»] chr4 (18 HSPs)
chr4 (140-318)||(6449661-6449839)
chr4 (148-323)||(40390884-40391058)
chr4 (139-310)||(15025785-15025955)
chr4 (210-327)||(10573942-10574059)
chr4 (192-296)||(6156049-6156152)
chr4 (239-318)||(15882221-15882300)
chr4 (148-314)||(38377811-38377964)
chr4 (159-318)||(31049984-31050144)
chr4 (258-318)||(40391085-40391145)
chr4 (264-322)||(784192-784250)
chr4 (77-114)||(38377820-38377857)
chr4 (262-318)||(784000-784056)
chr4 (148-228)||(784088-784168)
chr4 (148-208)||(14806451-14806511)
chr4 (195-318)||(22593330-22593453)
chr4 (186-287)||(26081196-26081297)
chr4 (261-318)||(43914042-43914099)
chr4 (78-110)||(47472199-47472231)
[»] chr3 (16 HSPs)
chr3 (148-318)||(34359330-34359500)
chr3 (148-328)||(39340760-39340938)
chr3 (148-318)||(50334632-50334804)
chr3 (148-318)||(44446851-44447021)
chr3 (149-268)||(45743779-45743898)
chr3 (148-318)||(28769505-28769673)
chr3 (198-318)||(20336780-20336900)
chr3 (217-326)||(13899456-13899564)
chr3 (187-318)||(20314887-20315018)
chr3 (139-266)||(22853361-22853489)
chr3 (191-300)||(17268848-17268957)
chr3 (219-318)||(9766052-9766151)
chr3 (198-264)||(16876437-16876503)
chr3 (148-208)||(16607176-16607236)
chr3 (258-318)||(43545340-43545400)
chr3 (262-318)||(52423195-52423251)
[»] chr1 (15 HSPs)
chr1 (148-315)||(20985930-20986099)
chr1 (148-318)||(33752959-33753128)
chr1 (170-318)||(50919301-50919448)
chr1 (152-318)||(16545413-16545578)
chr1 (192-296)||(13392831-13392935)
chr1 (192-318)||(25506585-25506709)
chr1 (219-315)||(29307657-29307753)
chr1 (159-226)||(37470916-37470983)
chr1 (271-322)||(16545318-16545369)
chr1 (222-312)||(3891451-3891541)
chr1 (271-318)||(1236708-1236755)
chr1 (221-311)||(37471004-37471094)
chr1 (289-318)||(23278793-23278822)
chr1 (198-299)||(29102855-29102956)
chr1 (258-318)||(35218058-35218118)
[»] chr2 (23 HSPs)
chr2 (148-318)||(34904010-34904180)
chr2 (182-313)||(6191094-6191225)
chr2 (167-296)||(855586-855715)
chr2 (159-318)||(35954224-35954383)
chr2 (148-314)||(31994722-31994888)
chr2 (159-314)||(8794580-8794731)
chr2 (159-318)||(30641034-30641194)
chr2 (148-318)||(27694513-27694683)
chr2 (148-318)||(39293110-39293279)
chr2 (159-296)||(10077626-10077764)
chr2 (214-318)||(24490617-24490721)
chr2 (168-318)||(29242582-29242730)
chr2 (203-288)||(30632591-30632676)
chr2 (203-288)||(30669060-30669145)
chr2 (216-317)||(36773985-36774085)
chr2 (257-318)||(37284290-37284351)
chr2 (159-318)||(434530-434690)
chr2 (148-208)||(21595025-21595085)
chr2 (257-318)||(11711255-11711316)
chr2 (257-318)||(17448896-17448957)
chr2 (140-217)||(33912690-33912766)
chr2 (257-318)||(43910163-43910224)
chr2 (270-318)||(14201328-14201376)
[»] chr7 (14 HSPs)
chr7 (159-318)||(25067651-25067810)
chr7 (148-318)||(27567663-27567835)
chr7 (159-318)||(11297757-11297917)
chr7 (213-313)||(34471227-34471327)
chr7 (148-318)||(20132053-20132223)
chr7 (148-296)||(28098553-28098700)
chr7 (162-264)||(13009377-13009480)
chr7 (187-310)||(30851674-30851797)
chr7 (148-284)||(12925246-12925382)
chr7 (232-318)||(21367169-21367255)
chr7 (187-278)||(28565079-28565170)
chr7 (244-318)||(28555280-28555354)
chr7 (248-318)||(28545217-28545287)
chr7 (83-111)||(38487338-38487366)
[»] scaffold0720 (1 HSPs)
scaffold0720 (187-318)||(5503-5634)
[»] scaffold0020 (1 HSPs)
scaffold0020 (159-318)||(152180-152339)
[»] scaffold0233 (1 HSPs)
scaffold0233 (148-325)||(16922-17099)
[»] scaffold0005 (2 HSPs)
scaffold0005 (148-313)||(253745-253909)
scaffold0005 (148-208)||(33216-33276)
[»] scaffold0478 (2 HSPs)
scaffold0478 (203-318)||(8599-8714)
scaffold0478 (239-318)||(3221-3300)
[»] scaffold1911 (1 HSPs)
scaffold1911 (203-296)||(2-95)
[»] scaffold0264 (1 HSPs)
scaffold0264 (211-296)||(19788-19873)
[»] scaffold0002 (2 HSPs)
scaffold0002 (148-284)||(363071-363207)
scaffold0002 (148-208)||(360544-360604)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 31 - 503
Target Start/End: Original strand, 14820297 - 14820745
Alignment:
Q  31 cataaataatactacagttattttattaagagttaaatannnnnnnagtccttacaaaattacaaatttttaagtttagtccctgcnnnnnnnnntcacc 130  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||| ||          |||||    
T  14820297 cataaataatactacagttattttattaagagttaaatatttttttagtccttacaaaattacaaattttcaagtttagtccatgaaaaaaaaaatcacc 14820396  T
Q  131 tttcttctctatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactaca 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||| | |||||||||||||||||    
T  14820397 tttcttctctatttatatttataaggactattttgaaggactaaaagtgaccattttttataaaaagtttttaaaatatggattatttttacaaactaca 14820496  T
Q  231 ttattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttacccttttattaa 330  Q
    ||||||||||||| ||||| ||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||         
T  14820497 ttattatagagggttaaaattaccactaaaattttgtaaggactaaacttgaaaacttatgattttataggaactaaaaacatattta-cctttt----- 14820590  T
Q  331 ttatattaatctatctcaattgagatatcaaaatctattaattgacacaaacgggatttaccttcaaaatgcaaatacaaacatctatcatcaattgcat 430  Q
       |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14820591 ---tattaat---------------tatcaaaatctattaattgacacaaacgggatttaccttcaaaatgcaaatagaaacatctatcatcaattgcat 14820672  T
Q  431 tacaagacaaatatttgacatggcgtcaaatcacattcacaagtattctttttactcggataatgtttatcct 503  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820673 tacaagacaaatatttggcatggcgtcaaatcacattcacaagtattctttttactcggataatgtttatcct 14820745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 19343721 - 19343551
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||||||| || |||| |||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |  ||| ||||    
T  19343721 tttataaggactagtttggaggactaaaattatctattttttgtaaaaagtttttaaaatatgaactatttttacaaactacaatattttttaggactaa 19343622  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || || |||||||||||||||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  19343621 aattatcactaaaattttatagagactaaacttaaaaactcatgattttgtaggtactaaaaacatattta 19343551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 169 - 318
Target Start/End: Original strand, 39058477 - 39058626
Alignment:
Q  169 gactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttata 268  Q
    ||||||||||||||||| ||||||||||||||| |||||| | |||||| |||||||||||| | |||| |||| |||||| ||||| ||||||||||||    
T  39058477 gactaaaagtgtccattgtttgtaaaaagttttcaaaataaggactattcttacaaactacaatgttatggaggactaaaattaccattaaaattttata 39058576  T
Q  269 gggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||  |||| |||||||||| |||||||||||| | ||||||||||||||    
T  39058577 ggggttaaacttaaaaacttgtgattttatagggattaaaaacatattta 39058626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 26724281 - 26724110
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggcta 246  Q
    |||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||| |||||| | ||| || ||| ||| |||| |  ||| || | |||    
T  26724281 tttataaggactattttggaggactaaaagtatccatttttttgtaaaaagttttcaaaatagggactgttcttataaattacaattctatggacgacta 26724182  T
Q  247 aaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||| ||||| ||||||||||||||||||||| |  ||||||  ||||||| |||| ||||||||||||||||    
T  26724181 aaattaccattaaaattttatagggactaaactcgaaaactcgtgattttgtagggactaaaaacatattta 26724110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 296
Target Start/End: Complemental strand, 38948672 - 38948544
Alignment:
Q  168 ggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttat 267  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||   |||||  ||| |||||| || || |||||||||||    
T  38948672 ggactaaaagtgtccattttttgtaaaaagtttttaaaatatgaactaatcttataaactactaaattatgaaggactaaaattatcattaaaattttat 38948573  T
Q  268 agggactaaaattaaaaacttatgatttt 296  Q
    |  ||||||| || ||||||| |||||||    
T  38948572 atagactaaatttgaaaacttgtgatttt 38948544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 318
Target Start/End: Original strand, 5159485 - 5159646
Alignment:
Q  157 attattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccac 256  Q
    ||||||||| ||||||| |||| |||||| ||||| |||||||||||||||| | |||||||||| |||||| | || | |  |||  ||||| ||| |     
T  5159485 attattttggaggactacaagtatccattttttgttaaaagtttttaaaataaggactatttttagaaactataataatttttaggattaaaattactat 5159584  T
Q  257 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||| |||||||  |||||||| |||||||  |||| ||||||||||| ||||    
T  5159585 taaaattttatagagactaaacctaaaaactcatgatttggtagggactaaaaacattttta 5159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 325
Target Start/End: Complemental strand, 36235923 - 36235746
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||||||| ||||||| |||| ||||| | | |||| ||| |||||||||||||||||  | ||| || |||||||||| | |||||| |||||||||    
T  36235923 tttataaggactattttggaggaataaaaatattcattttttataaaaagtttttaaaatggggactgttcttacaaactaaaatattatggagggctaa 36235824  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 325  Q
    || ||||  |||||||||||||| | |||| || |||||| || |||||  |   ||||| |||||||||| ||||||    
T  36235823 aattacccttaaaattttataggaattaaatttgaaaactcataattttgcatagactaagaacatatttaacctttt 36235746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 308
Target Start/End: Complemental strand, 16089854 - 16089694
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||  ||||||||||||  ||||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  16089854 tttatagggactattttagaggactaaaagtacccattttttgtaaaaagttttaaaaacagagactattcttacaaactataatattttttaggactaa 16089755  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaa 308  Q
    || ||| | ||||||||||| ||||||||| ||||||||| || | | |||||| ||||||    
T  16089754 aattacaattaaaattttattgggactaaacttaaaaactcataactatatagggactaaa 16089694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 5459101 - 5459043
Alignment:
Q  267 tagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 325  Q
    ||||||||||| |||||||||||| |||||||||  |||||||||||||||| ||||||    
T  5459101 tagggactaaacttaaaaacttataattttatagagactaaaaacatatttaacctttt 5459043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 15070076 - 15070000
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattatt 235  Q
    |||||||||||||||||| | |||||| ||||||||||||||| |||||    |||||| |||||||||||| ||||    
T  15070076 tattttgaaggactaaaaatatccattttttgtaaaaagttttcaaaatcgagactattattacaaactacaatatt 15070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 38607423 - 38607295
Alignment:
Q  190 gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactta 289  Q
    |||| ||||||| |||||| | |||||| | | |||||||| ||||||  ||| |||||| ||| | |||||||||||||  |||||| |||||||||      
T  38607423 gtaacaagttttcaaaataaggactattctaaaaaactacaatattatgaaggactaaaattacaattaaaattttatagaaactaaacttaaaaactct 38607324  T
Q  290 tgattttataggaactaaaaacatattta 318  Q
    ||| ||| |||| | ||||||||||||||    
T  38607323 tgagtttttaggtattaaaaacatattta 38607295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 21114667 - 21114568
Alignment:
Q  219 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||| |||||| | || |||||| || || ||||||||| |||  |||||| ||||||  || |||||||||||  ||||||||||||||||    
T  21114667 ttacaaactacaatattatggtggactaaaattatcattaaaattttctagaaactaaacttaaaagtttctgattttatagatactaaaaacatattta 21114568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 30403572 - 30403647
Alignment:
Q  153 aaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaacta 228  Q
    ||||| ||||||| || |||||| ||| ||||| ||||||||||||||||||||||   |||||| ||||||||||    
T  30403572 aaggactattttggagtactaaatgtgcccattttttgtaaaaagtttttaaaataatgactattcttacaaacta 30403647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 6502336 - 6502282
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagttttt 202  Q
    |||||| ||| ||||||| |||||||||||| |||| | ||||||||||||||||    
T  6502336 tttatagggactattttggaggactaaaagtatccaatttttgtaaaaagttttt 6502282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 15069996 - 15069930
Alignment:
Q  252 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| |||||||||| ||||||||||  |||||||| |||||||| ||||   ||||||||||||||    
T  15069996 accattaaaattttacagggactaaacataaaaactcatgattttgtagggcataaaaacatattta 15069930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 22860975 - 22861072
Alignment:
Q  166 aaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttt 265  Q
    ||||||||||  | |||||| |||||||||| ||||||||||| ||   ||| | |||||||||| || |||||||| |||||| ||| | |||||||||    
T  22860975 aaggactaaatatatccattttttgtaaaaactttttaaaatagga---attataacaaactacaatactatagaggactaaaattacaattaaaatttt 22861071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 4294859 - 4294818
Alignment:
Q  255 actaaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    |||||||||||||| |||||||| ||||||| ||||||||||    
T  4294859 actaaaattttataaggactaaacttaaaaatttatgatttt 4294818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 5459137 - 5459265
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||| ||||||| | |||| |||||| ||| |||  |||||| | || ||| ||| |||||| | ||||||  ||| ||||    
T  5459137 tttatagggactattttggaggaataaaagtattcattttttgtagaaaatttaaaaaatagggac-attcttataaactataatattatgaaggactaa 5459235  T
Q  248 aaataccactaaaattttatagggactaaa 277  Q
    |  ||||| |||||||||||||||||||||    
T  5459236 atttaccattaaaattttatagggactaaa 5459265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 16089706 - 16089653
Alignment:
Q  265 tatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||| ||||||||| || | | |||||| ||||||||||||||||    
T  16089706 tatagggactaaacttaaaaactcataactatatagggactaaaaacatattta 16089653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 1298894 - 1298950
Alignment:
Q  262 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| ||||||||||| |||||| ||| | ||||| |||| ||||||||||||||||    
T  1298894 ttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaacatattta 1298950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 15070153 - 15070125
Alignment:
Q  86 aaaattacaaatttttaagtttagtccct 114  Q
    |||||||||||||||||||||||||||||    
T  15070153 aaaattacaaatttttaagtttagtccct 15070125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 39344741 - 39344582
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||| ||||||||||||||||| | ||| ||||| ||||| ||||||||||||||| |||||||||||| |||||| |||| |||||  ||||| ||    
T  39344741 tattttggaggactaaaagtgtccaatttttttaaaaggttttcaaaatatgaactattcttacaaactacaatattatggaggactaaagttaccatta 39344642  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||||||| || ||||||| |||||||||| || |||||||||| |||||||    
T  39344641 aaattttatagggacttaatttaaaaatttatgattttgtatgaactaaaaatatattta 39344582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 12597023 - 12596853
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||||||||  | |||||| ||||||||| ||||| ||||||   |||| |||||||||||||| |||| | |||| ||||    
T  12597023 tttatagggactattttggaggactaaatatatccattttttgtaaaatgttttcaaaatagagactaattttacaaactacaatattttggaggactaa 12596924  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||||| ||||||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||||    
T  12596923 aattaccattaaaattttatagggactaaacttaaaaacttatgattttgtagagactaaaaacatattta 12596853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 24916049 - 24916206
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||| |||||||||| | |||||| ||| ||||||||||  |||||| || ||||||||||||||||||| ||| | |||| | |||| ||||| ||    
T  24916049 tattttggaggactaaaaatatccattttttctaaaaagtttccaaaatagga-ctatttttacaaactacat-attttggaggacgaaaattaccatta 24916146  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||    
T  24916147 aaattttatagggactaaacttaaaaactcatgattttatatggactaaaaacatattta 24916206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 318
Target Start/End: Original strand, 26938628 - 26938773
Alignment:
Q  173 aaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttataggga 272  Q
    ||||||||||||| |||  |||||||||| |||||| | |||||| |||||||||||   ||||| |||| | |||| ||||| ||||||||||||||||    
T  26938628 aaaagtgtccattttttcaaaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacaaaaattaccattaaaattttataggga 26938727  T
Q  273 ctaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||| || |||||||||||||||||||| ||||||| ||||||||    
T  26938728 ctaaacttgaaaacttatgattttatagggactaaaagcatattta 26938773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 26938876 - 26939032
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||||||||||||||||||||||| | |  |||||||||| |||||| | |||||| |||||||  ||   ||||| |||| |||||| ||||| ||    
T  26938876 tattttgaaggactaaaagtgtccattttata-aaaaagttttcaaaatagggactattcttacaaa--actaaattatggaggactaaaattaccatta 26938972  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||    
T  26938973 aaattttatagggactaaacttgaaaacttatgattttatagggactaaaagcatattta 26939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 32797102 - 32796980
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||||||| ||||||| ||||| |||||| || ||| |||||||||||||||||||||||| |||||| |||||||||||| || | |||||| ||||    
T  32797102 tttataaggactattttggaggaccaaaagtatctattttttgtaaaaagtttttaaaatatggactattcttacaaactacaatactttagaggactaa 32797003  T
Q  248 aaataccactaaaattttatagg 270  Q
    || ||| | ||||| ||||||||    
T  32797002 aattactattaaaaatttatagg 32796980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 10467482 - 10467631
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggcta 246  Q
    |||||| ||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||||| | |||||| ||||||  |||| |||||| ||||  ||    
T  10467482 tttatagggactattttggaggactaaaagtgtccatttttttgtaaaaagttttcaaaatagggactattcttacaagttacaatattatggaggatta 10467581  T
Q  247 aaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    ||| ||||| |||||||||||| ||| |||| ||||||| || |||||||    
T  10467582 aaattaccattaaaattttataaggaataaacttaaaaatttgtgatttt 10467631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 318
Target Start/End: Complemental strand, 33038362 - 33038214
Alignment:
Q  170 actaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatag 269  Q
    ||||||||| |||||| | |||||||||||||||||||| |||||||| ||||||||| || |||||| ||||  ||||| |  || |||||||| ||||    
T  33038362 actaaaagtatccattttctgtaaaaagtttttaaaataggaactattcttacaaactgcaatattatggaggattaaaattttcattaaaatttaatag 33038263  T
Q  270 ggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    | |||||| ||||||  | ||| |||| |||| ||||||||||| ||||    
T  33038262 gaactaaacttaaaagttgatgtttttgtagggactaaaaacattttta 33038214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 42023985 - 42024154
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||||||||||||| |||  |||||||||||  ||| ||||| | |||||| |||||| ||||| |||| | |||| ||||    
T  42023985 tttatatggactattttggaggactaaaagtgtacatattttgtaaaaagaattttaaatagggactattattacaa-ctacaatattttggaggactaa 42024083  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || || || ||||||||||| ||||||||| | |||||||  ||||||| || | |||||| |||||||||    
T  42024084 aattagcattaaaattttatggggactaaactcaaaaactcgtgattttgtaaggactaaacacatattta 42024154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 155 - 318
Target Start/End: Original strand, 17156980 - 17157146
Alignment:
Q  155 ggattattttgaaggactaaaagtgtccattatttg---taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaat 251  Q
    ||||||| ||| |||||||||||| |||||| |||    || | |||||| |||||| |  ||||||| |||||||| | |||| | |||| |||||| |    
T  17156980 ggattatcttggaggactaaaagtatccatttttttgtatatatagttttcaaaataggggctattttaacaaactaaaatattttggaggactaaaatt 17157079  T
Q  252 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| |||||||| |||||||||||  ||||||| | |||||||| |||| ||||||||||||||||    
T  17157080 accattaaaatttcatagggactaagtttaaaaaatcatgattttgtagggactaaaaacatattta 17157146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 17153652 - 17153537
Alignment:
Q  203 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttatagga 302  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| |||||||||||  ||||||||| |||||||| ||||     
T  17153652 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtaggg 17153553  T
Q  303 actaaaaacatattta 318  Q
    ||||||||||||||||    
T  17153552 actaaaaacatattta 17153537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 17219713 - 17219875
Alignment:
Q  159 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatag-agggctaaaaataccac 256  Q
    ||||||| |||||||||| | |||||| ||| ||| |||||||| |||||| | ||||||||||||||||| | |||| ||| ||| |||||| |||||     
T  17219713 tattttggaggactaaaaatatccatttttttgtataaagttttcaaaatagggactatttttacaaactaaaatatt-tagaaggactaaaattaccat 17219811  T
Q  257 taaaattttatagggactaa--aattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||| |||||||||||    |||||| || |||||||| |||  ||||||||||||||||    
T  17219812 taaaatttcatagggactaagcgcttaaaatctcatgattttgtagagactaaaaacatattta 17219875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 24292198 - 24292349
Alignment:
Q  167 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 266  Q
    |||||||||||| |||||| ||| ||||||  |||||||||| | ||| || ||||||||  || | ||||  ||| |||||| ||| | |||||||| |    
T  24292198 aggactaaaagtatccattttttataaaaatcttttaaaatagggactgttcttacaaacatcaattttatgaaggactaaaattacaattaaaatttaa 24292297  T
Q  267 tagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||| || ||| ||| ||||||| |||| |||||||||| |||||    
T  24292298 tagggactaaacttgaaagcttgtgattttttagggactaaaaacacattta 24292349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 16483848 - 16483745
Alignment:
Q  212 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 311  Q
    ||||||||||||||||||| |||| | || | |||||| ||||| |||||||||| |||||||||| ||||||||| |||||| | |||| | | |||||    
T  16483848 actatttttacaaactacaatatt-ttgaagactaaaattaccattaaaattttacagggactaaacttaaaaactcatgattctgtagggattgaaaac 16483750  T
Q  312 atatt 316  Q
    |||||    
T  16483749 atatt 16483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 8026136 - 8026016
Alignment:
Q  198 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 297  Q
    ||||||||||| | |||||| |||||||||||   ||||| |||| ||| ||  |||| ||||||||||||| || |||| || |||| || | ||||||    
T  8026136 tttttaaaatagggactattcttacaaactactaaattatggaggactacaatcaccattaaaattttatagagattaaactttaaaatttgtaatttta 8026037  T
Q  298 taggaactaaaaacatattta 318  Q
    |||| |||| |||||||||||    
T  8026036 tagggactataaacatattta 8026016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 8026216 - 8026272
Alignment:
Q  262 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||    
T  8026216 ttttatagggactaaacttaaaaacttataattttgtagggactaaatacatattta 8026272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 30743997 - 30743922
Alignment:
Q  212 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaact 287  Q
    ||||||||||||||||||| |||||| |||| |||||| || || |||| ||||||||| |||||| || ||||||    
T  30743997 actatttttacaaactacaatattattgaggactaaaattaacattaaagttttataggtactaaatttgaaaact 30743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 2414956 - 2414910
Alignment:
Q  232 tattatagagggctaaaaataccactaaaattttatagggactaaaa 278  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  2414956 tattatagaggactaaaattaccattaaaattttatagggactaaaa 2414910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 43651458 - 43651359
Alignment:
Q  219 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||| |||| | | || |||||| || || ||||||||| |||  |||||| ||||||  || |||||||||||  ||||||||||||||||    
T  43651458 ttacaaactacaatattgtggtggactaaaattatcattaaaattttctagaaactaaacttaaaagtttctgattttatagatactaaaaacatattta 43651359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 41828066 - 41828016
Alignment:
Q  245 taaaaataccactaaaattttatagggactaaaattaaaaacttatgattt 295  Q
    ||||| ||||| ||||||||||||  ||||||| |||||||||||||||||    
T  41828066 taaaattaccattaaaattttatatcgactaaacttaaaaacttatgattt 41828016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 41590719 - 41590756
Alignment:
Q  292 attttataggaactaaaaacatatttacccttttatta 329  Q
    ||||||||||||||||||||||||||| || |||||||    
T  41590719 attttataggaactaaaaacatatttaaccctttatta 41590756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 12911025 - 12911085
Alignment:
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||||||||||| ||||||||| ||| |||| || |  ||||||| |||||||    
T  12911025 aaaattttatagggactaaacttaaaaactaatggttttgtaagggctaaaaatatattta 12911085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 26736027 - 26736111
Alignment:
Q  234 ttatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||  |||||| || || ||||| |||||||  ||||||  ||| |||| |||||||| || ||||||||||||||||||    
T  26736027 ttatagagaactaaaattatcattaaaagtttatagaaactaaacctaataactcatgattttgtatgaactaaaaacatattta 26736111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 26938596 - 26938540
Alignment:
Q  262 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| ||||||||||| |||||| ||| | ||||| |||| ||||||||||||||||    
T  26938596 ttttgtagggactaaacttaaaagcttgtaattttgtagggactaaaaacatattta 26938540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 10516588 - 10516738
Alignment:
Q  167 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 266  Q
    |||||||||||| |||||  ||||||||||||| ||||| || | |||||| |||||||||||| |||||| ||||||||||| || || || |||||||    
T  10516588 aggactaaaagtatccatattttgtaaaaagttattaaa-tagggactattcttacaaactacaatattatggagggctaaaattatcattacaatttta 10516686  T
Q  267 tagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  10516687 tagggactaaatttaaaaacttatgattttgtagggactaaaaacatattta 10516738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 318
Target Start/End: Complemental strand, 3807213 - 3807068
Alignment:
Q  173 aaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttataggga 272  Q
    ||||||||| ||| ||||| ||||||||| |||||| | |||||| |||||||||||   ||||| |||| | |||| ||||| ||||||||||||| ||    
T  3807213 aaaagtgtctattttttgttaaaagttttcaaaatagggactattcttacaaactactaaattatggaggacgaaaattaccattaaaattttatagaga 3807114  T
Q  273 ctaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||  |||||||||||||||||||||| ||||||||||||||||    
T  3807113 ctaaacataaaaacttatgattttatagggactaaaaacatattta 3807068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 6197979 - 6197810
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||| |||||||||||||| ||| ||||||||||| ||||||   |||||| |||||||||||   ||||| |||| ||||    
T  6197979 tttatagggactattttggaggaataaaagtgtccattttttctaaaaagttttcaaaatagagactattcttacaaactactaaattatggaggactaa 6197880  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |  ||||| |||||||||||| |||||||| || |||| || |||||||||||| ||||||||||||||||    
T  6197879 atttaccattaaaattttatatggactaaacttgaaaa-ttgtgattttatagggactaaaaacatattta 6197810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 17957199 - 17957029
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| ||||||||| || |||||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  17957199 tttatagggactattttggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaa 17957100  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||| | ||||||||||| || |||||| ||||||||| || ||| |||||| ||||||||||||||||    
T  17957099 aattacaattaaaattttattggaactaaacttaaaaactcataattatatagggactaaaaacatattta 17957029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 3336025 - 3336152
Alignment:
Q  188 ttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaact 287  Q
    |||||||||||||| | ||||  |||||||  |||||| |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| |    
T  3336025 ttgtaaaaagttttcagaataacaactattcatacaaattacaatattttagaggactaaaattaccactaaaattttatagggtctaaacttaaaaatt 3336124  T
Q  288 tatgattttataggaactaaaaacatat 315  Q
    ||||||||| || | | |||||||||||    
T  3336125 tatgattttgtaaggattaaaaacatat 3336152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 25042897 - 25043002
Alignment:
Q  212 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 311  Q
    |||||| |||||||||||| ||| | ||||| |||||| ||||| |||||||||||| |||||||| || |||||| |||||||| |||| |||||||||    
T  25042897 actattcttacaaactacaatatcacagaggactaaaattaccattaaaattttata-ggactaaatttgaaaactcatgattttgtagggactaaaaac 25042995  T
Q  312 atattta 318  Q
    |||||||    
T  25042996 atattta 25043002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 4405838 - 4405943
Alignment:
Q  212 actatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 311  Q
    |||||| ||||||| || | |||||| ||||   |||| ||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||    
T  4405838 actattcttacaaagtagaatattatggaggataaaaattaccattaatattttatagggactaaacttaaaaacttatgattttgtagg-actaaaaac 4405936  T
Q  312 atattta 318  Q
    |||||||    
T  4405937 atattta 4405943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 4254536 - 4254636
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||| ||||| ||||||| |||  |||||||||||||| |||||||| ||||||||||||| | | ||||||||||||||||| |||| | |||| ||||    
T  4254536 tttacaaggactattttggagggttaaaagtgtccattttttgtaaacagtttttaaaatagggattatttttacaaactacagtatttttgaggactaa 4254635  T
Q  248 a 248  Q
    |    
T  4254636 a 4254636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 12611902 - 12611794
Alignment:
Q  210 gaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaa 309  Q
    |||||||| ||| |||||| | | |||| |||| |||||| ||||| |||||||||| ||||| |||| ||||||| | |||||||| |||| |||||||    
T  12611902 gaactattcttataaactataatgttatggaggactaaaattaccattaaaattttagagggattaaatttaaaaattcatgattttgtagggactaaaa 12611803  T
Q  310 acatattta 318  Q
    |||||||||    
T  12611802 acatattta 12611794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 24672392 - 24672269
Alignment:
Q  195 aagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatt 294  Q
    ||||||||||||||   |||||| ||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||||||||| || |||| |  ||| |    
T  24672392 aagtttttaaaatagagactattattacaaattacaatattatggaggactaaaattaccattaaaattttatagggactaaacttgaaaaatcgtgaat 24672293  T
Q  295 ttataggaactaaaaacatattta 318  Q
    || |||  | ||||||||||||||    
T  24672292 ttgtagagattaaaaacatattta 24672269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 30465195 - 30465318
Alignment:
Q  187 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 286  Q
    ||||| |||| ||||||||||| | |||||| ||||||||| || |||||| ||   |||||| ||||| ||||||||||||||  ||||| || |||||    
T  30465195 tttgtcaaaattttttaaaatagggactattcttacaaacttcaatattatggaaaactaaaattaccattaaaattttataggatctaaagttgaaaac 30465294  T
Q  287 ttatgattttataggaactaaaaa 310  Q
    |  | |||||||||| ||||||||    
T  30465295 tcttaattttatagggactaaaaa 30465318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 14198537 - 14198597
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    ||||||||||||||||||||||||||||| | || ||| ||| ||||||||||| ||||||    
T  14198537 tttataaggattattttgaaggactaaaaatatctattttttataaaaagttttaaaaata 14198597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 4409537 - 4409619
Alignment:
Q  232 tattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 315  Q
    |||||| |||| |||||| ||||| | | |||||||||||| |||| |||||||||| ||||||| |||| |||||||||||||    
T  4409537 tattatggaggactaaaattaccattgatattttatagggattaaacttaaaaacttgtgattttgtagg-actaaaaacatat 4409619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 10311736 - 10311637
Alignment:
Q  219 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||| |||| |||| | || | |||||| ||||| |||||||||||||| |||||| || ||||||  |||||||||| | ||| ||||||||||||    
T  10311736 ttacaaattacaatattgttgatgactaaaattaccattaaaattttataggaactaaatttgaaaactcgtgattttataaggacttaaaacatattta 10311637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 17141881 - 17141932
Alignment:
Q  244 ctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattt 295  Q
    |||||| ||||| ||||||||||||  ||||||| |||||||||||||||||    
T  17141881 ctaaaattaccattaaaattttatatcgactaaacttaaaaacttatgattt 17141932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 34187706 - 34187672
Alignment:
Q  77 agtccttacaaaattacaaatttttaagtttagtc 111  Q
    ||||| |||||||||||||||||||||||||||||    
T  34187706 agtccctacaaaattacaaatttttaagtttagtc 34187672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 14897365 - 14897305
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    |||||||||||||||||| ||||| |||| | |  ||| ||||||||||||||| ||||||    
T  14897365 tttataaggattattttggaggaccaaaaatatatattttttgtaaaaagttttcaaaata 14897305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 140 - 318
Target Start/End: Original strand, 6449661 - 6449839
Alignment:
Q  140 tatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatag 239  Q
    ||||| ||||||||| || ||||||||| ||||||||||||||||  |||| ||||||||||||||||| | |||||||||||||||||||||||||||     
T  6449661 tatttgtatttataaagactattttgaaagactaaaagtgtccatcttttgcaaaaagtttttaaaatagggactatttttacaaactacattattataa 6449760  T
Q  240 agggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |   |||||| || || ||||||||||| || | |||| || ||||||  ||||||| |||||| |||||| |||||||    
T  6449761 aaaactaaaattatcattaaaattttatgggcattaaacttgaaaactcgtgattttgtaggaattaaaaatatattta 6449839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 148 - 323
Target Start/End: Complemental strand, 40391058 - 40390884
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| || ||||||||| | |||| ||||||||| ||||| ||||||   |||||| |||||||||||| ||| || |||| ||||    
T  40391058 tttatagggactattttggagaactaaaagtattcattttttgtaaaatgttttaaaaatagagactattcttacaaactacaatat-atggaggactaa 40390960  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctt 323  Q
    || || || |||||||||||||| |||||| || |||||| |||||||| |||| |||||||||||||||| ||||    
T  40390959 aattatcattaaaattttataggaactaaacttgaaaactcatgattttgtagggactaaaaacatatttaacctt 40390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 15025955 - 15025785
Alignment:
Q  139 ctatttatattt-ataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattat 237  Q
    |||||||||||| ||||||| ||||||| ||||||||| || | |||| ||||||||||||||| |||||| | |||||| | |||||||| | |||| |    
T  15025955 ctatttatattttataaggactattttggaggactaaa-gtatacatt-tttgtaaaaagttttcaaaatagggactattatcacaaactataatatttt 15025858  T
Q  238 agagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaa 310  Q
    |||||  ||||| ||||| |||||||||||| | |||||| |||| ||||  ||||||| |||| ||||||||    
T  15025857 agaggattaaaattaccattaaaattttataagaactaaacttaataactcgtgattttgtagggactaaaaa 15025785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 327
Target Start/End: Complemental strand, 10574059 - 10573942
Alignment:
Q  210 gaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaa 309  Q
    ||||||||||||||||||||| |||||| ||||  ||||| | ||| || | ||||||||  |||||| || ||||||| ||||||| || |||||||||    
T  10574059 gaactatttttacaaactacaatattatggaggattaaaattgccattatatttttatagaaactaaatttgaaaacttgtgattttgtaagaactaaaa 10573960  T
Q  310 acatatttacccttttat 327  Q
    ||||||||| || |||||    
T  10573959 acatatttaaccctttat 10573942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 6156152 - 6156049
Alignment:
Q  192 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 291  Q
    |||||||| | ||||||||||||||||||| |||||||| |||||| || | ||||||| |||| ||||||||||||| | || |||||||||||  |||    
T  6156152 aaaaagttatcaaaatatgaactatttttataaactacaatattatggaagactaaaaaaaccattaaaattttatagagtct-aaattaaaaacacatg 6156054  T
Q  292 atttt 296  Q
    |||||    
T  6156053 atttt 6156049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 15882221 - 15882300
Alignment:
Q  239 gagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| |||||| ||||| |||||||| |||||||||||  ||||||||| |||||||| |||| ||||||||||||||||    
T  15882221 gaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgattttgtagggactaaaaacatattta 15882300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 314
Target Start/End: Complemental strand, 38377964 - 38377811
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||| | |||||| ||| ||| || |             ||||    
T  38377964 tttatagggactattttggaggactaaaagtgttcattttttataaaaagtttttaaaatagggactattcttataaattaga-------------ctaa 38377878  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 314  Q
    || ||||| ||||||||||||||||||||| ||||||| || ||||||| || | ||||||||||||    
T  38377877 aattaccattaaaattttatagggactaaacttaaaaatttgtgattttgtaaggactaaaaacata 38377811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 31049984 - 31050144
Alignment:
Q  159 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 257  Q
    ||||||| || ||||||| |||||||| ||| |||||| ||||| ||||||   ||||| ||||||| ||||| |||||| |||  |||||  ||| | |    
T  31049984 tattttggagaactaaaaatgtccatttttttgtaaaaggttttcaaaataatgactatctttacaagctacaatattatcgagaactaaatttacaatt 31050083  T
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    | |||||||||||| ||||| |||||||| | |||||||  ||| | ||||||||||||||    
T  31050084 ataattttataggggctaaacttaaaaacatgtgattttgcagggattaaaaacatattta 31050144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 40391085 - 40391145
Alignment:
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| ||| ||||||||||| |||||||||| | |||||||||| ||||||||||||||||    
T  40391085 aaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaacatattta 40391145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 784192 - 784250
Alignment:
Q  264 ttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccct 322  Q
    |||||||||||||| |||||||||  |||||||||| | |||||||||||||| |||||    
T  784192 ttatagggactaaacttaaaaactcgtgattttataaggactaaaaacatattaaccct 784250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 38377820 - 38377857
Alignment:
Q  77 agtccttacaaaattacaaatttttaagtttagtccct 114  Q
    |||||||||||||| |||||||||||||||||||||||    
T  38377820 agtccttacaaaatcacaaatttttaagtttagtccct 38377857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 784056 - 784000
Alignment:
Q  262 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||| |||||||| |||||||||||| |||||||| ||| |||||| |||||||    
T  784056 ttttataaggactaaatttaaaaacttataattttataagaaataaaaatatattta 784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 784088 - 784168
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaacta 228  Q
    |||||| ||| ||||||| | |||||||| | |||||| ||||||||||||||| |||||| | | |||||||| ||||||    
T  784088 tttatacggactattttggatgactaaaaatatccattttttgtaaaaagttttcaaaatagggattatttttagaaacta 784168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 14806511 - 14806451
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  14806511 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 14806451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 22593330 - 22593453
Alignment:
Q  195 aagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatt 294  Q
    |||||||||||| | | |||||||||||||||||   |||| |||| | ||||||  |||| |||||||| ||||  |||||| || ||||||| |||||    
T  22593330 aagtttttaaaaaagggactatttttacaaactatgatattgtagaagactaaaatcaccattaaaatttaatagaaactaaacttgaaaacttgtgatt 22593429  T
Q  295 ttataggaactaaaaacatattta 318  Q
    |  || | || |||||||||||||    
T  22593430 tcgtaaggacaaaaaacatattta 22593453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 26081196 - 26081297
Alignment:
Q  186 atttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaa 285  Q
    |||||| |||||||||||||||| |||||||| ||| |||||  | |||| | ||||  ||||| || || ||||||||||| |  ||||||||| ||||    
T  26081196 atttgtcaaaagtttttaaaataggaactattcttataaactttaatattgtggaggagtaaaattatcaataaaattttatcgaaactaaaattgaaaa 26081295  T
Q  286 ct 287  Q
    ||    
T  26081296 ct 26081297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 43914099 - 43914042
Alignment:
Q  261 attttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||| | |||||| |||||||||  |||||||||||| |||||||| |||||||    
T  43914099 attttatatgaactaaacttaaaaactcgtgattttatagggactaaaaatatattta 43914042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 47472199 - 47472231
Alignment:
Q  78 gtccttacaaaattacaaatttttaagtttagt 110  Q
    |||| ||||||||||||||||||||||||||||    
T  47472199 gtccctacaaaattacaaatttttaagtttagt 47472231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 34359500 - 34359330
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| | |||||||||||||||| | |||||| ||||||||||||||| |||| | | || |||||||||||||| | |||| | ||||  |||    
T  34359500 tttatagggacttttttgaaggactaaaattatccattttttgtaaaaagttttcaaaacagggaccatttttacaaactataatattttggaggaataa 34359401  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||||| |||||||||||| |||||||| ||||||||| |||||||| || | ||||||||||||||||    
T  34359400 aattaccattaaaattttatatggactaaacttaaaaactcatgattttgtaaggactaaaaacatattta 34359330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 328
Target Start/End: Complemental strand, 39340938 - 39340760
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    ||||||| || ||||||| ||||||||||||   |||| ||||||||||  ||  |||||| | ||||||||||||||||||| |||| | || | ||||    
T  39340938 tttataatgactattttggaggactaaaagtacacattttttgtaaaaaaatt--aaaatagggactatttttacaaactacaatattttggatgactaa 39340841  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttacccttttatt 328  Q
    || ||||| ||||| ||||||||||||||| |||||||||  ||||||| |||| ||| |||||||||||| || ||||||    
T  39340840 aattaccattaaaactttatagggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaaccctttatt 39340760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 50334632 - 50334804
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaa--gtttttaaaatatgaactatttttacaaactacattattatagagggct 245  Q
    |||||| ||| ||||||  |||||||||| | |||||| ||||||||||  || || |||||| |||||| |||||||||||||| |||| | || | ||    
T  50334632 tttatagggactattttagaggactaaaaatatccattttttgtaaaaaaagtattcaaaataggaactaattttacaaactacaatattttggaagact 50334731  T
Q  246 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| || || |||||||||||||||| |||| | ||||||| ||||||||||||  |||||||| |||||||    
T  50334732 aaaattatcattaaaattttatagggattaaagtaaaaaactcatgattttatagagactaaaaatatattta 50334804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 44446851 - 44447021
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| ||||||||||||   |||| ||||||||||||||| |||| |   |||||| |||||||||| | |||| |  ||| ||||    
T  44446851 tttatagggactattttggaggactaaaagtacacattttttgtaaaaagttttcaaaacagagactattcttacaaactataatattttttaggactaa 44446950  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||| | ||||||||||| |||| |||| ||||||||| || ||| |||||| ||||||||||||||||    
T  44446951 aattacaattaaaattttattgggattaaacttaaaaactcataattatatagggactaaaaacatattta 44447021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 45743898 - 45743779
Alignment:
Q  149 ttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaa 248  Q
    |||||| || ||||||| ||||| ||||||||||||| |||||||||||||||||||||| | || ||| |||||||||||| || |||| ||| |||||    
T  45743898 ttataaagactattttggaggacaaaaagtgtccattttttgtaaaaagtttttaaaatagggaccattcttacaaactacactactataaaggactaaa 45743799  T
Q  249 aataccactaaaattttata 268  Q
      ||| | ||||||||||||    
T  45743798 gttactattaaaattttata 45743779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 28769505 - 28769673
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||||||| ||||||| |||| ||||||| || ||| | ||||||||||||||||||||   |||||| |||||||||||| |||||| |||| | ||    
T  28769505 tttataaggactattttggaggattaaaagtatcaattttctgtaaaaagtttttaaaataaagactattcttacaaactacaatattatggaggacaaa 28769604  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||  |||| ||||||||||||  |||| || || ||||||    |||||||||| ||||||||||||||||    
T  28769605 aatcaccattaaaattttata-agact-aatttgaaaactcggaattttatagggactaaaaacatattta 28769673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 20336900 - 20336780
Alignment:
Q  198 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 297  Q
    |||| |||||| | |||||  ||||||| | || |||||| |||| |||||| ||||| |||||||||||| |||||||| || ||||||  |||||||     
T  20336900 ttttcaaaatagggactataattacaaaattcaatattatggaggactaaaattaccattaaaattttataaggactaaagttgaaaactcttgattttg 20336801  T
Q  298 taggaactaaaaacatattta 318  Q
    |||| ||||||||||||||||    
T  20336800 tagggactaaaaacatattta 20336780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 13899564 - 13899456
Alignment:
Q  217 ttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatt 316  Q
    ||||| |||||||| |||||| |||| |||||| ||||| |||||||||||||| |||||| || || |||  ||||| | |||||||||||||||||||    
T  13899564 ttttataaactacaatattatggaggactaaaattaccattaaaattttataggaactaaacttcaagact--tgattatgtaggaactaaaaacatatt 13899467  T
Q  317 t-accctttta 326  Q
    | |||||||||    
T  13899466 tgaccctttta 13899456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 20315018 - 20314887
Alignment:
Q  187 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 286  Q
    |||||||||| |||| ||||||   |||||| ||||||| | || |||||| |||| |||||| | ||| |||||||||||| |||||||| || |||||    
T  20315018 tttgtaaaaaattttcaaaatagagactattattacaaaattcaatattatggaggactaaaattgccattaaaattttataaggactaaagttgaaaac 20314919  T
Q  287 ttatgattttataggaactaaaaacatattta 318  Q
    |  ||||||| |||| ||||||| ||||||||    
T  20314918 tcttgattttgtagggactaaaagcatattta 20314887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 266
Target Start/End: Original strand, 22853361 - 22853489
Alignment:
Q  139 ctatttatattt-ataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattat 237  Q
    |||||||||||| ||| | | |||||| ||||| ||||||| || ||| || ||| ||| ||||||||||| | |||||||||||||| || | ||||||    
T  22853361 ctatttatattttataggaactattttaaaggattaaaagtatctatttttagtataaattttttaaaataaggactatttttacaaattaaaatattat 22853460  T
Q  238 agagggctaaaaataccactaaaatttta 266  Q
     |||| |||||| ||||| ||||||||||    
T  22853461 ggaggactaaaattaccattaaaatttta 22853489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 17268957 - 17268848
Alignment:
Q  191 taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttat 290  Q
    ||||| |||| ||||||||  ||||||||||||||||||| || |||||| | |||||| || || ||||||| |||| |||||| | ||||| |||  |    
T  17268957 taaaatgtttataaaatatagactatttttacaaactacaataatatagaagactaaaattatcattaaaattgtatatggactatacttaaacactcgt 17268858  T
Q  291 gattttatag 300  Q
     |||||||||    
T  17268857 aattttatag 17268848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 9766052 - 9766151
Alignment:
Q  219 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||| |||| |||||| |||||| || || ||||||||| |||  | |||| ||||||  || | |||||||||  ||||||||||||||||    
T  9766052 ttacaaactacaatattgtagaggactaaaattatcattaaaattttctagaaaataaacttaaaagtttctaattttatagatactaaaaacatattta 9766151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 16876503 - 16876437
Alignment:
Q  198 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattt 264  Q
    ||||||||||| | |||||| |||||||||||| |||||| |||| |||||| ||| | ||||||||    
T  16876503 tttttaaaatagggactattcttacaaactacaatattatggaggactaaaattacaattaaaattt 16876437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 16607176 - 16607236
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    |||||||||||||||||| ||||| |||| | |  ||| ||||||||||||||| ||||||    
T  16607176 tttataaggattattttggaggaccaaaaatatatattttttgtaaaaagttttcaaaata 16607236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 43545340 - 43545400
Alignment:
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||| |||||||||||| ||||  | ||   |||||||||||||||||||||||||    
T  43545340 aaaattttagagggactaaaataaaaagttgatatatttataggaactaaaaacatattta 43545400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 52423195 - 52423251
Alignment:
Q  262 ttttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||| ||||  | ||||||||| ||||| |||| ||||||||||||||||    
T  52423195 ttttatagggattaaacatgaaaacttataattttgtagggactaaaaacatattta 52423251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 20986099 - 20985930
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattattt--gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggct 245  Q
    |||||| ||| ||||||| |||||||||||| || ||| |||  |||||||||||| |||||| | |||||| || ||||||||| |||| |||| | ||    
T  20986099 tttatagggactattttggaggactaaaagtatctattttttttgtaaaaagttttcaaaatagggactattcttgcaaactacaatattttagaagact 20986000  T
Q  246 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 315  Q
    |||| ||||| ||||||||||||||||||||| |||||||||  ||||||| |||||| |||||||||||    
T  20985999 aaaattaccattaaaattttatagggactaaatttaaaaactcgtgattttgtaggaattaaaaacatat 20985930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 33752959 - 33753128
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| || | ||||||||| |||| ||||||| ||  ||| ||||||   || ||| |||||||||||| |||||| |||||||||    
T  33752959 tttatagggactattttggagaagtaaaagtgttcattttttgtaataaagtttcaaaatagtgaccattcttacaaactacaatattatggagggctaa 33753058  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||  |||| |||||||||||| |||||||| || ||||||| ||||||| |||| ||||||||||||||||    
T  33753059 aatcaccattaaaattttatacggactaaactttaaaacttgtgattttgtagg-actaaaaacatattta 33753128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 170 - 318
Target Start/End: Original strand, 50919301 - 50919448
Alignment:
Q  170 actaaaagtgtccattatttg-taaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttata 268  Q
    |||||| ||||||||| |||  |||||||||||||||||||  | |||||||||||| |||||||| || || | |||||| ||||| ||||||||||||    
T  50919301 actaaatgtgtccatttttttctaaaaagtttttaaaatatcgattatttttacaaattacattatcat-gaagactaaaattaccattaaaattttata 50919399  T
Q  269 gggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||| || |||| |||||||||| || | ||||||||||||||||    
T  50919400 gggactaaactt-aaaatttatgattttgtaaggactaaaaacatattta 50919448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 318
Target Start/End: Original strand, 16545413 - 16545578
Alignment:
Q  152 taaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaat 251  Q
    |||||| ||||||| |||||||||| | |||||| |||||| |||||||| |||||| | || ||||||| |||||||| |||| | ||||  ||||  |    
T  16545413 taaggactattttggaggactaaaaatatccattttttgtataaagttttcaaaatagggaccattttta-aaactacaatattttggaggagtaaattt 16545511  T
Q  252 accactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    | || |||||||||||||||| |||| ||||||||| |  ||||| |||| | ||||||||||||||    
T  16545512 atcattaaaattttatagggattaaacttaaaaactcaaaattttgtagggattaaaaacatattta 16545578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 13392935 - 13392831
Alignment:
Q  192 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 291  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | || | |||||| || || ||||| ||||||||||||||| || |||||| |||    
T  13392935 aaaaagtttttaaaatagggactatttttacaaactacaatattttggatgactaaaattaacattaaaactttatagggactaaactttaaaactaatg 13392836  T
Q  292 atttt 296  Q
    |||||    
T  13392835 atttt 13392831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 25506585 - 25506709
Alignment:
Q  192 aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatg 291  Q
    ||||||||||||||||||| ||||||  ||||||||||| ||||||| ||| ||| ||||| || ||||| || ||||| |||||| || |||| |  ||    
T  25506585 aaaaagtttttaaaatatggactattcatacaaactacaatattataaaggactacaaataacattaaaa-ttaataggaactaaactttaaaa-tcgtg 25506682  T
Q  292 attttataggaactaaaaacatattta 318  Q
    ||||| ||||||||||| |||||||||    
T  25506683 attttgtaggaactaaacacatattta 25506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 29307657 - 29307753
Alignment:
Q  219 ttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 315  Q
    |||||||||||| |||| |  ||| |||||| ||| | |||||| |||||||||||||| ||||||||| |||||||| |||| |||| ||||||||    
T  29307657 ttacaaactacagtattttgaaggactaaaattacaattaaaatcttatagggactaaacttaaaaactcatgattttgtagggactagaaacatat 29307753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 37470916 - 37470983
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaac 226  Q
    ||||||| |||||||||||  |||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  37470916 tattttggaggactaaaagcatccattttttgtaaaaagtttttcaaataggaactattcttacaaac 37470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 16545369 - 16545318
Alignment:
Q  271 gactaaaattaaaaacttatgattttataggaactaaaaacatatttaccct 322  Q
    ||||||| |||||||||| | |||||||||| ||||||||||||||||||||    
T  16545369 gactaaacttaaaaacttgtaattttatagggactaaaaacatatttaccct 16545318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 3891541 - 3891451
Alignment:
Q  222 caaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaaca 312  Q
    |||| |||| |||||  |||| |||||| ||||| ||||||||||||||||||||| ||| | | || ||||||| ||||| |||||||||    
T  3891541 caaattacaatattacggaggactaaaactaccaataaaattttatagggactaaacttatacatttgtgattttgtaggatctaaaaaca 3891451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 1236708 - 1236755
Alignment:
Q  271 gactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||||||||||| ||||| |||| | ||||||||||||||    
T  1236708 gactaaaattaaaaacttataattttttagggattaaaaacatattta 1236755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 311
Target Start/End: Original strand, 37471004 - 37471094
Alignment:
Q  221 acaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaac 311  Q
    |||||||| | |||||| |||| ||||||  |||| |||| |||||||||||||||| || ||||||  ||||||  |||| |||||||||    
T  37471004 acaaactataatattatggaggactaaaagcaccattaaatttttatagggactaaacttgaaaactcttgatttggtagggactaaaaac 37471094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 23278793 - 23278822
Alignment:
Q  289 atgattttataggaactaaaaacatattta 318  Q
    ||||||||||||||||||||||||||||||    
T  23278793 atgattttataggaactaaaaacatattta 23278822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 29102956 - 29102855
Alignment:
Q  198 tttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttta 297  Q
    ||||||||||| | |||||||||  || ||||| |||| | |||| |||||| || || | ||||| ||||||||||||| || |||||| ||||| |||    
T  29102956 tttttaaaatagggactatttttgaaagctacaatattttggaggactaaaattatcatttaaattgtatagggactaaacttgaaaactcatgatatta 29102857  T
Q  298 ta 299  Q
    ||    
T  29102856 ta 29102855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 35218118 - 35218058
Alignment:
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||  || ||||||| ||||||| || ||||||| |||| ||||||||||||||||    
T  35218118 aaaattttccagagactaaatttaaaaaattgtgattttgtagggactaaaaacatattta 35218058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 34904180 - 34904010
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||| ||||| ||||||  |||||||||||| |||||| ||||||||||||||| |||||| | | |||| |||||||||||| ||||||  ||  ||||    
T  34904180 tttaaaaggactattttataggactaaaagtatccattctttgtaaaaagttttcaaaatagggattattcttacaaactacaatattatgaagaactaa 34904081  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||  | || ||||||| |||||||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  34904080 aattattattacaattttacagggactaaacttaaaaacttgtgattttgtagggactaaaaacatattta 34904010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 6191225 - 6191094
Alignment:
Q  182 cattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaatta 281  Q
    |||| ||||||||||||||| |||||| | |||||| ||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||||||||| ||     
T  6191225 cattttttgtaaaaagttttcaaaatacggactattcttacaaagtacaatattatggaggactaaaattaccattaaaattttatagggactaaacttg 6191126  T
Q  282 aaaacttatgattttataggaactaaaaacat 313  Q
    || ||| ||||||||||||  |||||||||||    
T  6191125 aatactaatgattttatagatactaaaaacat 6191094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 855715 - 855586
Alignment:
Q  167 aggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaatttta 266  Q
    |||||||||| | | |||| ||||||||||||||| |||||||| ||||||  ||||||||||| ||| |  |||| |||||| ||||| ||||||||||    
T  855715 aggactaaaaatattcattttttgtaaaaagttttcaaaatatggactattcctacaaactacaatatcaccgaggactaaaattaccattaaaatttta 855616  T
Q  267 tagggactaaaattaaaaacttatgatttt 296  Q
    ||||||||||| ||||||||| ||||||||    
T  855615 tagggactaaacttaaaaactcatgatttt 855586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 35954383 - 35954224
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgt-aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 257  Q
    ||||||| |||||||||||| | || | ||| | |||||| ||||| ||||   |||||| |||||||||||| |||||| |||| |||||| ||||| |    
T  35954383 tattttggaggactaaaagttttcaatttttattaaaaagattttataatagagactattcttacaaactacaatattattgaggactaaaattaccatt 35954284  T
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||| |||||||||||| || ||||||| ||| |||||||| ||||||||||||||||    
T  35954283 aaaatttaatagggactaaactttaaaacttgtga-tttatagggactaaaaacatattta 35954224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 314
Target Start/End: Original strand, 31994722 - 31994888
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||| || ||||||||||| |||  |||||||||| |||||  | |||||| ||||||| |||| |||||| |||  ||||    
T  31994722 tttatagggactattttggaggattacaagtgtccattttttaaaaaaagttttcaaaattgggactattcttacaaattacaatattatggagaactaa 31994821  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 314  Q
    || ||| | |||||||||| ||||| |||| ||||||| || ||||||| |||| ||||||||||||    
T  31994822 aattactattaaaattttaaagggattaaacttaaaaatttgtgattttgtagggactaaaaacata 31994888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 159 - 314
Target Start/End: Complemental strand, 8794731 - 8794580
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||||||| | |||||| |||| || |||| ||||||   || |||||| ||||| ||    
T  8794731 tattttggatgactaaaaatgtccattttttgtaaaaagtttttaaaatagggactattcttacgaattacaatattat---ggactaaaattaccatta 8794635  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacata 314  Q
    |||||||||| |||||||| || |||| || ||||||| |||| ||| ||||||||    
T  8794634 aaattttata-ggactaaacttgaaaatttgtgattttgtagggactgaaaacata 8794580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 30641034 - 30641194
Alignment:
Q  159 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 257  Q
    ||||||| ||||| |||||| |||||| ||| ||| |||||||| |||||| | |||| |||||||||||| | ||||   |||| ||||| |||||| |    
T  30641034 tattttggaggaccaaaagtatccatttttttgtataaagttttcaaaatagggactacttttacaaactaaaatatttcggaggactaaatataccatt 30641133  T
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||| ||| |||||||  ||||||||| ||||| || |||| ||||||||||||||||    
T  30641134 aaaatttcatatggactaagcttaaaaactcatgatattgtagggactaaaaacatattta 30641194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 27694513 - 27694683
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||||||||| |||||||||||| | || ||| |||||||||||||||||||||| | || | |||||| ||| ||| |||| | ||||  |||    
T  27694513 tttatagggattatttagaaggactaaaattatctattttttgtaaaaagtttttaaaatagggaccacttttacgaaccacaatattttggaggattaa 27694612  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||||  |||||||| | ||| | |||| ||||||||| ||||||||  | ||| ||||||||||||||    
T  27694613 aattacctttaaaatttgacaggaattaaacttaaaaactcatgattttgcaagaattaaaaacatattta 27694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 39293110 - 39293279
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||| ||||| | |||||| |||  |||| |||||||||||| |||||||| ||||||| |||| |||| |||||| ||||    
T  39293110 tttatatggactattttggaggaataaaaatatccatttttta-aaaatgtttttaaaataggaactattattacaaattacaatattttagaggactaa 39293208  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||||| |||||||||||||||| ||||  || ||| |  ||||||| || | | ||||||||||||||    
T  39293209 aattaccattaaaattttatagggattaaacctagaaattcgtgattttgtatggattaaaaacatattta 39293279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 159 - 296
Target Start/End: Complemental strand, 10077764 - 10077626
Alignment:
Q  159 tattttgaaggactaaaagtgtccattattt--gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccac 256  Q
    ||||||| |||||||||| | |||||| |||  |||||||||||| |||||| | |||||| |||||||||||| ||||||  |||  ||||| |||||     
T  10077764 tattttggaggactaaaaatatccattttttttgtaaaaagttttcaaaatagggactattattacaaactacaatattatgaaggattaaaattaccat 10077665  T
Q  257 taaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    ||||| ||||||||||||||| || |||||| ||||||||    
T  10077664 taaaa-tttatagggactaaacttgaaaactcatgatttt 10077626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 24490617 - 24490721
Alignment:
Q  214 tatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacat 313  Q
    |||| |||||||||||| |||| |||||| |||||| ||| | ||||||||||||| ||||||| ||||||||  || ||||| |||| |||||||||||    
T  24490617 tattcttacaaactacaatattgtagaggactaaaattactattaaaattttatagagactaaacttaaaaacacataattttgtagggactaaaaacat 24490716  T
Q  314 attta 318  Q
    |||||    
T  24490717 attta 24490721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 318
Target Start/End: Original strand, 29242582 - 29242730
Alignment:
Q  168 ggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttat 267  Q
    ||||||||||| || ||| ||||||||||| |   |||||| | |||||| |||||||||| | |||  | |||| |||||| ||||| |||||||||||    
T  29242582 ggactaaaagtatcgattttttgtaaaaaggtc--aaaatagggactattcttacaaactataatatcttcgaggactaaaattaccattaaaattttat 29242679  T
Q  268 agggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||| || ||||||  | ||||| |||| ||||||||| ||||||    
T  29242680 agggactaaacttgaaaactcctaattttgtagggactaaaaacgtattta 29242730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 30632591 - 30632676
Alignment:
Q  203 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactt 288  Q
    |||||| | ||||||| ||||||||||| ||||||  | | |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  30632591 aaaatagggactatttgtacaaactacaatattatccaagactaaaattaccattaaaattttatagagactaaaattaaaaactt 30632676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 30669060 - 30669145
Alignment:
Q  203 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaactt 288  Q
    |||||| | ||||||| ||||||||| | ||||||  | | |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  30669060 aaaatagggactatttgtacaaactataatattattcaagactaaaattaccattaaaattttatagagactaaaattaaaaactt 30669145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 317
Target Start/End: Complemental strand, 36774085 - 36773985
Alignment:
Q  216 tttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatat 315  Q
    |||||||||| |||| ||| | |||||  ||||| ||||| |||||| ||||||| ||||| || |||||||| ||| ||| ||||||||||||||||||    
T  36774085 tttttacaaattacaatatcacagaggattaaaattaccattaaaatcttataggaactaacat-aaaaacttgtgagtttgtaggaactaaaaacatat 36773987  T
Q  316 tt 317  Q
    ||    
T  36773986 tt 36773985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 37284290 - 37284351
Alignment:
Q  257 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||||||||||| ||||||||| || ||||| || | |||||||| |||||||    
T  37284290 taaaattttatagggactaaacttaaaaactcataattttgtaaggactaaaaatatattta 37284351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 434530 - 434690
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattatt-atagagggctaaaaataccact 257  Q
    ||||||| ||||| |||| | |||||| |||  |||||||||| |||| ||| |||||| |||||||||  | |||| | | ||| ||||||  |||| |    
T  434530 tattttggaggacgaaaaatatccattttttagaaaaagttttgaaaagatggactattcttacaaacttaaatatttacaaaggactaaaatcaccatt 434629  T
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||  ||||||| |||||||  | || ||| ||| || |||||||||||||||    
T  434630 aaaattttatattgactaaacttaaaaatgtgtgctttgataagatctaaaaacatattta 434690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 21595085 - 21595025
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  21595085 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 21595025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 11711255 - 11711316
Alignment:
Q  257 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||||||||||| || ||| ||  ||||||||||  ||||||||| |||||||    
T  11711255 taaaattttatagggactaaacttgaaagctcgtgattttataaaaactaaaaatatattta 11711316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 17448896 - 17448957
Alignment:
Q  257 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||||   |||||| ||||||||| || |||||||||| | ||||||||||||||    
T  17448896 taaaattttataaaaactaaacttaaaaactcataattttatagggattaaaaacatattta 17448957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 33912766 - 33912690
Alignment:
Q  140 tatttatatttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatt 217  Q
    |||||||||||| || || |||||||||||| ||| ||| | || ||||| ||||||||| |||||||| ||||||||    
T  33912766 tatttatatttacaaagactattttgaaggaataatagtattca-tatttttaaaaagttgttaaaataagaactatt 33912690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 43910224 - 43910163
Alignment:
Q  257 taaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||||| | |||| |||||||||||||||||| |||| |||  ||| |||||||    
T  43910224 taaaattttataggaattaaacttaaaaacttatgattttgtagggactccaaatatattta 43910163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 14201328 - 14201376
Alignment:
Q  270 ggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||| ||| |  |||||||||||| ||||||||||||||||    
T  14201328 ggactaaaattagaaagtcctgattttatagggactaaaaacatattta 14201376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 25067810 - 25067651
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||| | |||||||||| |||||| |||||||| |||||| |||||| | ||||||||||||||||| | |||||| ||||  ||||| ||||| ||    
T  25067810 tattttggaagactaaaagtatccattttttgtaaacagttttcaaaataaggactatttttacaaactataatattatggaggattaaaattaccatta 25067711  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||||||  || ||| ||||||| |||||||||| |||  | ||||||||||||||    
T  25067710 aaattttatagaaaccaaacttaaaaatttatgattttgtagagattaaaaacatattta 25067651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 318
Target Start/End: Original strand, 27567663 - 27567835
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgt--aaaaagtttttaaaatatgaactatttttacaaactacattattatagagggct 245  Q
    |||||||||| ||||||| |||||||||| | | | || ||| |  |||||||||| |||||| | |||||| |||||||||||| ||||||  ||| ||    
T  27567663 tttataaggactattttggaggactaaaaatatactttttttttgcaaaaagttttcaaaataaggactattcttacaaactacaatattatgtaggact 27567762  T
Q  246 aaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| ||||| |||||||||||||||| |||| || |||||| |||||||| |||| |||||||| |||||||    
T  27567763 aaaattaccattaaaattttatagggaataaactttaaaactcatgattttgtagggactaaaaatatattta 27567835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 11297917 - 11297757
Alignment:
Q  159 tattttgaaggactaaaagtgtccattattt-gtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccact 257  Q
    ||||||| |||||||||||| |||||| ||| ||| |||||||| |||||| | ||||||||||||||||| | |||| | |||| |||||| ||||| |    
T  11297917 tattttggaggactaaaagtatccattttttagtataaagttttcaaaatagggactatttttacaaactaaaatattttggaggactaaaattaccatt 11297818  T
Q  258 aaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||| ||||| |||||  ||||||||| || ||||| |||| | ||||||||||||||    
T  11297817 aaaatttcataggaactaagcttaaaaactcattattttgtagggaataaaaacatattta 11297757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 34471327 - 34471227
Alignment:
Q  213 ctatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaaca 312  Q
    ||||| |||||||||||| |||| | |||| |||||| ||||| ||||||||||||||||||||| |||||| ||| ||||||| |||| ||||||||||    
T  34471327 ctattattacaaactacaatattttggaggactaaaattaccattaaaattttatagggactaaacttaaaagcttgtgattttgtagggactaaaaaca 34471228  T
Q  313 t 313  Q
    |    
T  34471227 t 34471227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 318
Target Start/End: Complemental strand, 20132223 - 20132053
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| ||||||||| || |||||| ||||||||||||||| |||| |   |||||| ||||||| || | |||| |  ||| ||||    
T  20132223 tttatagggactattttggaggactaaaggtatccattttttgtaaaaagttttcaaaacagagactattcttacaaattataatattttttaggactaa 20132124  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    || ||| | ||||||||||| |  |||||| ||||||||| || ||| |||||| ||||||||||||||||    
T  20132123 aattacaattaaaattttattgaaactaaacttaaaaactcataattatatagggactaaaaacatattta 20132053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 28098700 - 28098553
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaa-gtttttaaaatatgaactatttttacaaactacattattatagagggcta 246  Q
    |||||| ||| ||||||| |||||||||| | | |||| |||||||||| ||||| |||||||| | ||||| ||||||||||  |||||| |||| |||    
T  28098700 tttatagggactattttggaggactaaaaatattcattttttgtaaaaaagttttcaaaatatggattatttctacaaactac--tattatcgaggacta 28098603  T
Q  247 aaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    ||| ||||| ||||||||||||  ||| ||| ||||||||| ||||||||    
T  28098602 aaattaccattaaaattttataaagaccaaacttaaaaactcatgatttt 28098553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 13009377 - 13009480
Alignment:
Q  162 tttgaaggactaaaagtgtcca-ttatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaa 260  Q
    |||| |||||||||||| | || || ||||||||||||| ||||||||   |||||| |||||||||||| ||||||||||| |||||| ||||| ||||    
T  13009377 tttggaggactaaaagtattcacttttttgtaaaaagttattaaaataacgactattcttacaaactacaatattatagaggactaaaattaccattaaa 13009476  T
Q  261 attt 264  Q
    ||||    
T  13009477 attt 13009480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 30851674 - 30851797
Alignment:
Q  187 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 286  Q
    ||||| |||| ||||||||||| | |||||| ||||||||| || |||||| ||   |||||| ||||| ||||||||||||||  ||||| || |||||    
T  30851674 tttgtcaaaattttttaaaatagggactattcttacaaacttcaatattatggaaaactaaaattaccattaaaattttataggatctaaagttgaaaac 30851773  T
Q  287 ttatgattttataggaactaaaaa 310  Q
    |  | |||||||||||||||||||    
T  30851774 tcttaattttataggaactaaaaa 30851797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 12925382 - 12925246
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||||||||||||||| |||||||||| | || ||| ||||||||||||||| |||||| | | |||| ||| ||| || | | || | |||  ||||    
T  12925382 tttataaggattattttggaggactaaaaatatctattttttgtaaaaagttttaaaaataaggattattattaaaaattataattttttggagaactaa 12925283  T
Q  248 aaataccactaaaattttatagggactaaaattaaaa 284  Q
    || || || |||||||||||||| |||||| ||||||    
T  12925282 aattatcattaaaattttataggaactaaacttaaaa 12925246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 21367255 - 21367169
Alignment:
Q  232 tattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||| ||||  ||||| ||||| ||||||||||||  ||||||| ||||||||| || ||||||||||  |||||||||||||||    
T  21367255 tattatggaggattaaaattaccattaaaattttataaagactaaatttaaaaactcataattttataggggctaaaaacatattta 21367169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 28565079 - 28565170
Alignment:
Q  187 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaa 278  Q
    |||||||| |||||| ||||||   |||||||||| |||||||||||||||| ||| |||||| ||  | |||||||||||| | |||||||    
T  28565079 tttgtaaagagttttcaaaatagagactatttttataaactacattattataaaggactaaaattattattaaaattttataagaactaaaa 28565170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 28555354 - 28555280
Alignment:
Q  244 ctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||| ||||| |||||||||||| |||||||| ||||||| | | |||||| |||  ||||||||||||||||    
T  28555354 ctaaaattaccattaaaattttatatggactaaacttaaaaaatcacgattttgtagagactaaaaacatattta 28555280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 28545217 - 28545287
Alignment:
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||||||| ||| |||||||||  |||| | || |||| |||||||||| |||| ||||||||||||||||    
T  28545217 aaataccattaatattttatagaaactacactttaaaatttatgattttgtagggactaaaaacatattta 28545287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 38487338 - 38487366
Alignment:
Q  83 tacaaaattacaaatttttaagtttagtc 111  Q
    |||||||||||||||||||||||||||||    
T  38487338 tacaaaattacaaatttttaagtttagtc 38487366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 5503 - 5634
Alignment:
Q  187 tttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaac 286  Q
    |||||| |||||||| |||||| | |||| |||||||||||| | |||| | |||| ||||| |||||| |||||||| |||||||| ||  ||||||||    
T  5503 tttgtataaagttttcaaaatagggactacttttacaaactaaaatattttggaggactaaatataccattaaaatttcatagggaccaagcttaaaaac 5602  T
Q  287 ttatgattttataggaactaaaaacatattta 318  Q
    | |||||||| |||| ||||||||||||||||    
T  5603 tcatgattttgtagggactaaaaacatattta 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 152180 - 152339
Alignment:
Q  159 tattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaaaaataccacta 258  Q
    ||||||||| |||||||| | | |||| |||| || ||||||| |||||| | |||||| |||||| ||||| ||||||  ||| |||||| ||||| ||    
T  152180 tattttgaaagactaaaaatattcattttttgcaagaagttttaaaaatagggactattcttacaatctacaatattatgaaggactaaaattaccatta 152279  T
Q  259 aaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    ||||||||||  ||||||| || |||| | || |||||||||| |||| |||||||||||    
T  152280 aaattttataaagactaaacttgaaaattcataattttatagggactacaaacatattta 152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 325
Target Start/End: Original strand, 16922 - 17099
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||  ||||||||| || | |||| || |||||| ||||| |||||| | |||||| ||||||| | |  |||| |  ||| ||||    
T  16922 tttatagggactattttagaggactaaaggtatacatttttagtaaaacgttttcaaaatagggactattcttacaaattgctatattttgtaggactaa 17021  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatatttaccctttt 325  Q
    || ||||| |||||||||||||||| ||||  | ||||||  |||||||||||| |||||||||||||||| ||||||    
T  17022 aattaccattaaaattttatagggattaaacctgaaaactcgtgattttatagggactaaaaacatatttaacctttt 17099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 253745 - 253909
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    |||||| ||| ||||||| |||| ||||||| |||||| ||||||||||  ||| ||||||   |||||  |||||||||| | |||| || ||| ||||    
T  253745 tttatagggactattttggaggattaaaagtatccattttttgtaaaaaagttt-aaaatagagactatccttacaaactataatattttaaaggactaa 253843  T
Q  248 aaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacat 313  Q
    || ||| | |||||||||||| | |||||| ||||||||| || |||||||||||| |||||||||    
T  253844 aattactattaaaattttatatgaactaaacttaaaaactcataattttataggaattaaaaacat 253909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 33216 - 33276
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    |||||||||||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  33216 tttataaggattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 33276  T

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Target: scaffold0478 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 8714 - 8599
Alignment:
Q  203 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttatagga 302  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| || ||||||||  ||||||||| |||||||| ||||     
T  8714 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcattgggactaagcttaaaaactcatgattttttaggg 8615  T
Q  303 actaaaaacatattta 318  Q
    ||||||||||||||||    
T  8614 actaaaaacatattta 8599  T

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Target: scaffold0478; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 3300 - 3221
Alignment:
Q  239 gagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgattttataggaactaaaaacatattta 318  Q
    |||| |||||| ||||| |||||||| ||||||| |||  ||||||||| |||||||| |||| ||||||||||||||||    
T  3300 gaggactaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgtagggactaaaaacatattta 3221  T

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Target: scaffold1911 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 95 - 2
Alignment:
Q  203 aaaatatgaactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    |||||| | |||||||| |||||||  | |||| | |||| |||||| ||||| |||||||| |||||||||||  ||||||||| ||||||||    
T  95 aaaatagggactattttaacaaacttaaatattttggaggactaaaattaccattaaaatttcatagggactaagcttaaaaactcatgatttt 2  T

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Target: scaffold0264 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 19788 - 19873
Alignment:
Q  211 aactatttttacaaactacattattatagagggctaaaaataccactaaaattttatagggactaaaattaaaaacttatgatttt 296  Q
    |||||||||||| ||||||| |||| | || | |||||| ||||  |||||||||||||||||||||  |||||| | ||||||||    
T  19788 aactatttttactaactacaatattttcgacgactaaaattaccgttaaaattttatagggactaaacataaaaattcatgatttt 19873  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 284
Target Start/End: Original strand, 363071 - 363207
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaatatgaactatttttacaaactacattattatagagggctaa 247  Q
    ||||||||||||| |||| |||||||||| | || ||| ||||||||||||| | |||||| | | |||| ||| ||| || | | || | |||  ||||    
T  363071 tttataaggattactttggaggactaaaaatatctattttttgtaaaaagttctaaaaataaggattattattaaaaattataattttttggagaactaa 363170  T
Q  248 aaataccactaaaattttatagggactaaaattaaaa 284  Q
    || || || |||||||||||||| |||||| ||||||    
T  363171 aattatcattaaaattttataggaactaaacttaaaa 363207  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 360544 - 360604
Alignment:
Q  148 tttataaggattattttgaaggactaaaagtgtccattatttgtaaaaagtttttaaaata 208  Q
    ||||||| |||||||||| ||||| |||| | || ||| ||||||||||||||| ||||||    
T  360544 tttataaagattattttggaggaccaaaaatatctattttttgtaaaaagttttcaaaata 360604  T

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