View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_low_25 (Length: 204)
Name: NF2142_low_25
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 14810274 - 14810452
Alignment:
| Q |
11 |
cataggagaagtgaaggatcatgcaatgatcgatgagcatcgtggcacgatttgtgcgaaccagatatggtcattgcaattatgagtaagagttcaattt |
110 |
Q |
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| T |
14810274 |
cataggagaagtgaaggatcatgcaatgatcgatgagcatcgtggcacgatttgtgcgaaccagatatggtcattgcaattatgagtaagagttcaattt |
14810373 |
T |
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| Q |
111 |
ttgaaggtattgaaggcactttgcagctccaggtattgaaaacagtttgcagctccaagcaactggaattagtggttaa |
189 |
Q |
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| T |
14810374 |
ttgaaggtattgaaggcactttgcagctccaggtattgaaaacagtttgcagctccaagcaactggaattagtggttaa |
14810452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 15257269 - 15257447
Alignment:
| Q |
11 |
cataggagaagtgaaggatcatgcaatgatcgatgagcatcgtggcacgatttgtgcgaaccagatatggtcattgcaattatgagtaagagttcaattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15257269 |
cataggagaagtgaaggatcatgcaatgatcgatgagcatcgtggcacgatttgtgcgaaccagatatggtcattgcaattatgagtaagagttcaattt |
15257368 |
T |
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| Q |
111 |
ttgaaggtattgaaggcactttgcagctccaggtattgaaaacagtttgcagctccaagcaactggaattagtggttaa |
189 |
Q |
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| T |
15257369 |
ttgaaggtattgaaggcactttgcagctccaggtattgaaaacagtttgcagctccaagcaactggaattagtggttaa |
15257447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 17523988 - 17523798
Alignment:
| Q |
11 |
cataggagaagtgaaggatcatgcaatgatcgatgagcatcgtggcacgatttgtgcgaaccagatatggtc------------attgcaattatgagta |
98 |
Q |
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||||||||||||||| |||||||| |||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17523988 |
cataggagaagtgaatgatcatgccatgatcaatgagcatcatggcgcgatttgtgcgaaccagatatggtctataaaatcctaattgcaattatgagta |
17523889 |
T |
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| Q |
99 |
agagttcaatttttgaaggtattgaaggcactttgcagctccaggtattgaaaacagtttgcagctccaagcaactggaattagtggttaa |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
17523888 |
agagttcaatttttgaaggtattgaaggcactttgcagctccaggtattgaaaactgtttgcagctccaagcaactggaattcgtggttaa |
17523798 |
T |
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