View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_low_3 (Length: 466)
Name: NF2142_low_3
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 14868732 - 14869179
Alignment:
| Q |
1 |
tcattcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnnnnngggtaagn |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14868732 |
tcattcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatcatcagggtaaga |
14868831 |
T |
|
| Q |
101 |
nnnnnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
200 |
Q |
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| T |
14868832 |
aaaaaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgc |
14868931 |
T |
|
| Q |
201 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14868932 |
taaaagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataat |
14869031 |
T |
|
| Q |
301 |
caccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869032 |
caccacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagta |
14869131 |
T |
|
| Q |
401 |
cctggtttggcacaaggaatggaaagcttcaacgccgacactcctaat |
448 |
Q |
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| T |
14869132 |
cctggtttggcacgaggaatggaaagcttcaacgccgacactcctaat |
14869179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 139 - 447
Target Start/End: Complemental strand, 16909800 - 16909490
Alignment:
| Q |
139 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
236 |
Q |
| |
|
||||||||||| | | |||| ||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
|
| Q |
237 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
336 |
Q |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
|
| Q |
337 |
aatcgaccgcgattctagccgcggtcgtcccattagaactcatgttgtcatgtttccacaagtacctggtttggcacaaggaatggaaagcttcaacgcc |
436 |
Q |
| |
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||||||| |||||| || |||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||| || |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactcacattgtcaagtttccacaagtacctggtttgccacaaggaatggaaagtttcaatgct |
16909501 |
T |
|
| Q |
437 |
gacactcctaa |
447 |
Q |
| |
|
||||||||||| |
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|
| T |
16909500 |
gacactcctaa |
16909490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
254 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
306 |
Q |
| |
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||||| ||||| || ||||||||||||||||||||| | |||||||||||||| |
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| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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