View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2142_low_5 (Length: 440)
Name: NF2142_low_5
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 4746843 - 4746517
Alignment:
| Q |
16 |
aagaaagagacaaagaaaatcaaatattacatatattgaaatataagattttatttatttatatttcaaggttttgtagatgaaccgaagcatagatgga |
115 |
Q |
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| T |
4746843 |
aagaaagagacaaagaaaatcaaatattacatatattgaaatataagattttatttatttatatttcatggttttgtagatgaaccgaagcatagatgga |
4746744 |
T |
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| Q |
116 |
tgaatacctggagataaggttatagatgagtgagtcaggatcagatttagcatatttggcgaaggtaggcatgttaccaaagaaaggccaacccatatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4746743 |
tgaatacctggagataaggttatagatgagtgagtcaggatcagatttagcatatttggcgaaggtaggcatgttaccaaagaaaggccaacccatatca |
4746644 |
T |
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| Q |
216 |
cctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatatccacccaacaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4746643 |
cctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatatccacccaacaaag |
4746544 |
T |
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| Q |
316 |
ctgctactaggataaaccattgggaat |
342 |
Q |
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| T |
4746543 |
ctgctactaggatcaaccattgggaat |
4746517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 176 - 342
Target Start/End: Complemental strand, 4756289 - 4756123
Alignment:
| Q |
176 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756289 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
4756190 |
T |
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| Q |
276 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggataaaccattgggaat |
342 |
Q |
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| T |
4756189 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggatcaaccattgggaat |
4756123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 4746471 - 4746433
Alignment:
| Q |
385 |
gcaatgtctttgataacttctttggttgctagtgtttat |
423 |
Q |
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| T |
4746471 |
gcaatgtctttgataacttctttggttgctagtgtttat |
4746433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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