View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2142_low_6 (Length: 432)
Name: NF2142_low_6
Description: NF2142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2142_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 36949358 - 36948963
Alignment:
| Q |
16 |
cacaattgttcctcttcctctctttttcagcaagagtcacgatacttcttccactgaaccgccgctcaccgccatcccgctctctccaatgccgccctgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949358 |
cacaattgttcctcttcctctctttttcagcaagagtcacgatacctcttccactgaaccgccgctcaccgccatcccgctctctccaatgccgccctgc |
36949259 |
T |
|
| Q |
116 |
accgccactctcacaggctgaaaatcgtgctctccattttatgcagaaataaatattgcagcttctgttttcctatattttttaataacgatcaatgaga |
215 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949258 |
accaccactctcacaggctgaaaattgtgctctccattttatgcagaaataaatattgcagcttctgttttcctatattttttaataacgatcaatgaga |
36949159 |
T |
|
| Q |
216 |
aataaatgtacagaaatcaattgtgattgtttttcatgctttttgttaacaatccatgagaagtaaactttaattttgaagagaagtagaactcgtgaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949158 |
aataaatgtacagaaatcaattgtgactttttttcatgctttttgttaacaatccatgagaagtaaactttaattttgaagagaagtagaactcgtgaat |
36949059 |
T |
|
| Q |
316 |
caaaggaattgattggtaatagcggcgtgctgggggtagaagaagagccgagggataactgttcctttttcattattataaaaacttcaattttga |
411 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36949058 |
caaaggaattgattggtaatggcggcgtgctgggggtagaagaagagccgagggataactgttcctttttcattattataaaaactttaattttga |
36948963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University