View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_13 (Length: 439)
Name: NF21430_high_13
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 36171670 - 36172046
Alignment:
| Q |
1 |
tgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagataaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171670 |
tgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagataaaac |
36171769 |
T |
|
| Q |
101 |
gaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgcttctcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171770 |
gaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgcttctcaa |
36171869 |
T |
|
| Q |
201 |
tatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgcatagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36171870 |
tatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgcatagt |
36171969 |
T |
|
| Q |
301 |
accctgccagttgtttccaacaacatgaaccactagtcttacacatacaccagatcagacatgacaccggtagtaatttaag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36171970 |
accctgccagttgtttccaacaacatgaaccactag-----atcatacaccagatcagacatgacaccggtagtaatttaag |
36172046 |
T |
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