View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_16 (Length: 384)
Name: NF21430_high_16
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 31339413 - 31339766
Alignment:
| Q |
13 |
tgaaatgagtaaaccaagtgttgtttgataaactatgttgtttgtgatattcagtgagggnnnnnnngagctagggtcgggaaaacatcgtgaacaaaag |
112 |
Q |
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| T |
31339413 |
tgaaatgagtaaacgaagtgttgtttgataaactatgttgtttgtgatattcagtgagggtttttttgagctagggtcgggaaaacatcgtgaacaaaaa |
31339512 |
T |
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| Q |
113 |
ggagatttcatcaaaaaattcatcataaattttatacttaattggtttcaaaacgaatttgagaaaaatattcagacatcaagtttttcagaaaatgttt |
212 |
Q |
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| T |
31339513 |
ggagatttcatcaaaaaattcatcataaattttatacttaattggtttcaaaacgaatttgagaaaaatattcagacatcaagtttttcagaaaatgttt |
31339612 |
T |
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| Q |
213 |
cgaggaacatgaaatttatgtaaattattttgttatctttaaatttaattaaggacttaattaaagttcttgaaaatattttgagaaagttattttacta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31339613 |
cgaggaacatgaaatttatgtaaattattttgttatctttaaatttaattaaggacttaattaaagttcttgaaaatattttgagaaagttattttacta |
31339712 |
T |
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| Q |
313 |
gtgatagtaaagtctttatatctaagtgaaactacattcttttgaccattgttg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31339713 |
gtgatagtaaagtctttatatctaagtgaaactacattcttttgaccattgttg |
31339766 |
T |
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