View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21430_high_20 (Length: 315)

Name: NF21430_high_20
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21430_high_20
NF21430_high_20
[»] chr4 (19 HSPs)
chr4 (1-309)||(4123640-4123948)
chr4 (1-309)||(4361149-4361457)
chr4 (1-309)||(4344718-4345026)
chr4 (1-290)||(4320342-4320628)
chr4 (1-186)||(4335417-4335602)
chr4 (215-309)||(4335607-4335701)
chr4 (1-135)||(6498401-6498535)
chr4 (1-135)||(6545323-6545457)
chr4 (6-135)||(6675780-6675909)
chr4 (39-134)||(6758834-6758929)
chr4 (1-119)||(6753032-6753150)
chr4 (10-135)||(6588071-6588196)
chr4 (1-101)||(6621416-6621516)
chr4 (1-135)||(6651139-6651273)
chr4 (1-135)||(6728478-6728612)
chr4 (37-134)||(7885267-7885364)
chr4 (76-134)||(4133290-4133348)
chr4 (1-131)||(6532111-6532241)
chr4 (40-108)||(6822802-6822870)
[»] chr6 (23 HSPs)
chr6 (7-139)||(5354485-5354617)
chr6 (7-144)||(5102480-5102617)
chr6 (34-141)||(5066563-5066670)
chr6 (7-138)||(5073780-5073911)
chr6 (7-130)||(5344939-5345062)
chr6 (1-130)||(5690039-5690168)
chr6 (1-217)||(5096780-5096996)
chr6 (34-144)||(5128283-5128393)
chr6 (34-141)||(5157497-5157604)
chr6 (34-141)||(5397055-5397162)
chr6 (7-141)||(5181796-5181930)
chr6 (9-130)||(5243793-5243914)
chr6 (7-130)||(5176817-5176940)
chr6 (7-130)||(5278644-5278767)
chr6 (35-144)||(5370677-5370786)
chr6 (36-141)||(5426017-5426122)
chr6 (34-141)||(5383431-5383538)
chr6 (29-137)||(5434135-5434243)
chr6 (7-135)||(5447665-5447793)
chr6 (7-141)||(5284258-5284392)
chr6 (34-141)||(5350499-5350600)
chr6 (111-144)||(5137532-5137565)
chr6 (253-309)||(5181643-5181699)
[»] scaffold0294 (1 HSPs)
scaffold0294 (8-141)||(8769-8902)
[»] chr5 (6 HSPs)
chr5 (34-135)||(8877714-8877815)
chr5 (37-128)||(20838740-20838831)
chr5 (40-128)||(12599054-12599142)
chr5 (37-128)||(20812385-20812476)
chr5 (37-119)||(15803019-15803101)
chr5 (1-130)||(30417892-30418021)
[»] chr3 (6 HSPs)
chr3 (61-138)||(47986744-47986821)
chr3 (61-138)||(47996031-47996108)
chr3 (61-138)||(48005318-48005395)
chr3 (61-138)||(48014603-48014680)
chr3 (19-130)||(6905806-6905917)
chr3 (40-130)||(32411083-32411173)
[»] chr8 (10 HSPs)
chr8 (22-130)||(3391536-3391644)
chr8 (16-128)||(3262629-3262740)
chr8 (22-130)||(3364262-3364370)
chr8 (58-130)||(3407323-3407395)
chr8 (37-128)||(31175955-31176046)
chr8 (37-127)||(3314966-3315056)
chr8 (39-127)||(3325003-3325091)
chr8 (14-129)||(3286516-3286631)
chr8 (37-128)||(3398522-3398613)
chr8 (40-130)||(3267198-3267288)
[»] chr7 (3 HSPs)
chr7 (8-132)||(18935465-18935589)
chr7 (70-132)||(36213707-36213769)
chr7 (37-132)||(34724464-34724559)
[»] scaffold0468 (1 HSPs)
scaffold0468 (19-130)||(6146-6257)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-101)||(6731-6831)
[»] scaffold0813 (1 HSPs)
scaffold0813 (1-135)||(4701-4835)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 4123948 - 4123640
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4123948 actgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttcctt 4123849  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcgaatag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4123848 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcaaatag 4123749  T
Q  201 tatttcccatgatctatcgtctattttcagtgtccttccaaaaattcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4123748 tatttcccatgatctatcgtctattttcagtgtccttccaaaacttcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaaca 4123649  T
Q  301 agaattttg 309  Q
    |||||||||    
T  4123648 agaattttg 4123640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4361149 - 4361457
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    ||||||||||||||||| |||||||| ||  | || |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4361149 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 4361248  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcgaatag 200  Q
    ||||||||||||||||||||| ||||||||||  |||| | ||| || |||||||| |||  || |||||||||||||||| |||  ||||| | |||||    
T  4361249 ctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatcccttgtttttttaaatgcaacaaatag 4361348  T
Q  201 tatttcccatgatctatcgtctattttcagtgtccttccaaaaattcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaaca 300  Q
    ||||||||||||| |||| |||||||    ||||||||| ||  ||||  |||||||| |||| ||||||||||||||||||||||||||||||||| ||    
T  4361349 tatttcccatgatatatcatctatttcttatgtccttccgaagcttcaaagcctttggctggaatgtggatcagaacttcaactttcacaggacacagca 4361448  T
Q  301 agaattttg 309  Q
    | |||||||    
T  4361449 ataattttg 4361457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4344718 - 4345026
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||||||||||| ||||||||  || | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4344718 actgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 4344817  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcgaatag 200  Q
    ||||||||| ||||||||||| ||||||||||  |||| | ||| || |||||||| |||  || |||||||| |||||||||||  ||||| | |||||    
T  4344818 ctatcatttggtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatcgcttgtttctttaaatgcaacaaatag 4344917  T
Q  201 tatttcccatgatctatcgtctattttcagtgtccttccaaaaattcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaaca 300  Q
    ||||||||||||| |||| ||||||| || |||| |||| ||  ||||  | |||||| | || |||||||||||||||||||| ||||| ||  |||||    
T  4344918 tatttcccatgatatatcatctatttccaatgtctttccgaagcttcaaagtctttggctcgaatgtggatcagaacttcaactatcacaagatgcaaca 4345017  T
Q  301 agaattttg 309  Q
    || ||||||    
T  4345018 agtattttg 4345026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 4320628 - 4320342
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    ||||||||||||||||| ||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4320628 actggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 4320529  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcgga-atgtcatcccttgtttctttgcatgcatcgaata 199  Q
    ||||||||| |||||||||||   || ||||||||||  |||||||| ||||||||||| ||  | |||||||||||||| |||||  | ||||| | |     
T  4320528 ctatcatttggtcttggatgt---caccaaataatctgtcacccgcttttcaaacagct-tctcacatgtcatcccttgtgtctttagaggcatcaactt 4320433  T
Q  200 gtatttcccatgatctatcgtctattttcagtgtccttccaaaaattcagtgcctttggttggagtgtggatcagaacttcaactttcaca 290  Q
    |||||| ||| |||||||| ||||||| || ||||||||||||  ||||  |||||||| ||   |||||||||||||||||||| |||||    
T  4320432 gtattttccacgatctatcatctatttccattgtccttccaaagcttcaaagcctttggctgacatgtggatcagaacttcaactatcaca 4320342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4335417 - 4335602
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    ||||||||||||||||||||||||||  || | | ||||||||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||||||||    
T  4335417 actggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttcctt 4335516  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttg 186  Q
    |||| |||| |||||||||| |||||||||||||| || |||| ||||||||||||||||| ||||||||| ||| ||||||||||    
T  4335517 ctataatttggtcttggatggtaccaacaaataatgtctcaccagctgttcaaacagctgttggaatgtcaccccatgtttctttg 4335602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 4335607 - 4335701
Alignment:
Q  215 tatcgtctattttcagtgtccttccaaaaattcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaacaagaattttg 309  Q
    |||| ||| ||||||  |||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4335607 tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtggatcagaacttcaactttcacaagacacaacaagaattttg 4335701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6498535 - 6498401
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||||||||||| |||||||| ||| | || ||||||||||||||||  |||||| |  |||||| | ||||||| ||||||||||| |||||||    
T  6498535 actgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttcctt 6498436  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataat 135  Q
    || |||||  ||||||||||| |||| ||||||||    
T  6498435 ctctcattcggtcttggatgtcaccatcaaataat 6498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6545457 - 6545323
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| ||||||||||||||||||||| ||| | || |  ||||||||||||| ||||||| |  |||| | ||||||||| ||||||||||| || ||||    
T  6545457 actgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6545358  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataat 135  Q
    || |||||  ||||||| ||| |||| ||||||||    
T  6545357 ctctcattcggtcttggctgtcaccatcaaataat 6545323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 6675780 - 6675909
Alignment:
Q  6 tataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatc 105  Q
    ||||| |||||| |||||||| ||| | || ||||| ||||||||||| || ||| | ||||| | ||||||||| |||| |||||| ||||||||| ||    
T  6675780 tataataaaagttcccttttcaatagtaagatcaaagagcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctc 6675879  T
Q  106 atttcgtcttggatgttaccaacaaataat 135  Q
    |||  ||||||||||| |||| ||||||||    
T  6675880 attaagtcttggatgtcaccatcaaataat 6675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 6758834 - 6758929
Alignment:
Q  39 aaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataa 134  Q
    |||||||||| ||||||||||||||||||| | |||||||||  |||||||| | ||||||| | |||||  |||| |||||| ||||||||||||    
T  6758834 aaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtctaggatgtcaccaacaaataa 6758929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 6753032 - 6753150
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| ||||||||||||||||||||| ||| | || |  ||||||||||||| ||||||| |  |||| | ||||||||| ||||||||||| || ||||    
T  6753032 actgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6753131  T
Q  101 ctatcatttcgtcttggat 119  Q
    || |||||  |||||||||    
T  6753132 ctctcattcggtcttggat 6753150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 6588196 - 6588071
Alignment:
Q  10 acaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcattt 109  Q
    ||||||||||| ||||| ||| | |||   ||||||||||||| ||||||| | ||||| | ||||||||| ||||||||||| || |||||| |||||     
T  6588196 acaaaagtgccattttcaatagtaaggatgaaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattc 6588097  T
Q  110 cgtcttggatgttaccaacaaataat 135  Q
     |||||||||||  ||| ||||||||    
T  6588096 ggtcttggatgtcgccatcaaataat 6588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6621516 - 6621416
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||||||||||| |||||||| ||| |  | || |||| |||||||| ||||||| | ||||||| ||||||||| ||||| |||||||||||||    
T  6621516 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6621417  T
Q  101 c 101  Q
    |    
T  6621416 c 6621416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 6651139 - 6651273
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| ||||||||||||||| ||||| ||| | || | || || |||||||| ||||||||| ||||| | ||||||||| ||||| ||||| |||||||    
T  6651139 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttcctt 6651238  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataat 135  Q
     | || ||  ||||||||||| |||| ||| ||||    
T  6651239 ttctcgttcggtcttggatgtcaccatcaactaat 6651273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 6728478 - 6728612
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| ||||||||||||||| ||||| ||| | || |  ||||| ||||||| ||||||| |  |||| | ||||||||| ||||||||||| || ||||    
T  6728478 actgctataacaaaagtgccattttcaatagtaagattgaaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6728577  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataat 135  Q
    || |  ||| |||||||||||  ||| ||||||||    
T  6728578 ctcttgtttggtcttggatgtcgccatcaaataat 6728612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 7885364 - 7885267
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataa 134  Q
    ||||||||||||| |||||||||||| ||||| ||| ||||||   |||||   |||||||||||||| |||  ||||||| |||  |||||||||||    
T  7885364 tcaaaaagcattgcatttatttctctatgtggttataaaggatctgcacgtagagtgtttccttctattattcagtcttggctgtctccaacaaataa 7885267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 4133348 - 4133290
Alignment:
Q  76 ggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataa 134  Q
    |||| ||||||||| || |||||||||||||||  | ||||||||| ||||||||||||    
T  4133348 ggatactcacgtgaagtatttccttctatcattcagacttggatgtcaccaacaaataa 4133290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 6532241 - 6532111
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||| || |||| |||||||| ||| | ||  |||||| ||||| || ||||||| | || || | ||||||||| |||  |||||| |||||||    
T  6532241 actgctatagcagaagtccccttttcaatagtaagaccaaaaaacattgaatatatttctatttgcggctttgaaggattttcaaatgatgtatttcctt 6532142  T
Q  101 ctatcatttcgtcttggatgttaccaacaaa 131  Q
    ||||||||  ||||||||||| |||| ||||    
T  6532141 ctatcattcggtcttggatgtcaccatcaaa 6532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 6822802 - 6822870
Alignment:
Q  40 aaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatt 108  Q
    ||||||||||||| ||||||| | || || | ||||||||| ||||||||||| || |||||| |||||    
T  6822802 aaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatgtattcccttctctcatt 6822870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 5354617 - 5354485
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||| ||||| || ||| | || || ||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||    
T  5354617 ataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatca 5354518  T
Q  107 tttcgtcttggatgttaccaacaaataatctcc 139  Q
    ||| ||||||||||| |||||||||||||||||    
T  5354517 tttggtcttggatgtcaccaacaaataatctcc 5354485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 5102617 - 5102480
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||||||  || | ||||||||||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||||||    
T  5102617 ataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatca 5102518  T
Q  107 tttcgtcttggatgttaccaacaaataatctcccaccc 144  Q
    | | ||||||||||| ||||||||||||||| ||||||    
T  5102517 tctggtcttggatgtcaccaacaaataatcttccaccc 5102480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 5066670 - 5066563
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    |||||||||||||||||||  || ||| |||| || |||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  5066670 aggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaata 5066571  T
Q  134 atctccca 141  Q
    ||||||||    
T  5066570 atctccca 5066563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 5073911 - 5073780
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||||||  || | ||||| ||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| || || ||||    
T  5073911 ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatca 5073812  T
Q  107 tttcgtcttggatgttaccaacaaataatctc 138  Q
    ||| ||||||||||| ||| ||||||||||||    
T  5073811 tttggtcttggatgtcaccgacaaataatctc 5073780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 5344939 - 5345062
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||||||| |||||||   || | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  5344939 ataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatca 5345038  T
Q  107 tttcgtcttggatgttaccaacaa 130  Q
    | | ||||||||||| ||||||||    
T  5345039 tctggtcttggatgtcaccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5690168 - 5690039
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    ||||| |||||||  ||||||||||| ||  | ||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||| | ||||| |    
T  5690168 actggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccat 5690069  T
Q  101 ctatcatttcgtcttggatgttaccaacaa 130  Q
    ||||||||| ||||||||||| ||||||||    
T  5690068 ctatcatttggtcttggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5096780 - 5096996
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    ||||| |||| || ||| ||||||||  || | |||||||||||||||||||  |||||||| |||||  |||||||||| ||||||||||||||||| |    
T  5096780 actggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgt 5096879  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatcgaatag 200  Q
    ||||||| | ||||||| ||| |||||||||||||||| || ||   ||||||||| ||   |  |||||||||||||||||| |  ||| | | |||||    
T  5096880 ctatcatctggtcttggttgtcaccaacaaataatctctcatccctagttcaaacatctaatgtcatgtcatcccttgtttctgtagatgtaccaaatag 5096979  T
Q  201 tatttcccatgatctat 217  Q
    || ||||||||| ||||    
T  5096980 tagttcccatgaactat 5096996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 5128393 - 5128283
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    ||||||||||||||||||| ||| |||||||| ||  |||||||||| ||| ||||||||||||| |||||||| | ||||||||||| ||||||||||     
T  5128393 aggtcaaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatg 5128294  T
Q  134 atctcccaccc 144  Q
    |||||||||||    
T  5128293 atctcccaccc 5128283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 5157604 - 5157497
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    |||||||||||||||||||  || ||| || | || ||||||||||| || |||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  5157604 aggtcaaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaata 5157505  T
Q  134 atctccca 141  Q
    ||||||||    
T  5157504 atctccca 5157497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 5397055 - 5397162
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    |||| |||||||||||||||||| ||| |||| |||||||||||||| ||| |||| ||||||||  ||||||||||||||||||||| |||||||| ||    
T  5397055 aggttaaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaatta 5397154  T
Q  134 atctccca 141  Q
    | ||||||    
T  5397155 acctccca 5397162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 5181930 - 5181796
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| |||||| |||||  || | | ||| |||||||||| || ||||||  |||||||||||||||||||||||| ||||||||||||  | ||||    
T  5181930 ataacaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatca 5181831  T
Q  107 tttcgtcttggatgttaccaacaaataatctccca 141  Q
    ||| ||||||||||| ||| |||||||||||||||    
T  5181830 tttggtcttggatgtcaccgacaaataatctccca 5181796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 5243914 - 5243793
Alignment:
Q  9 aacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatt 108  Q
    ||||| ||||||||||||  || | |||||||||||||| |||| ||||||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||     
T  5243914 aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc 5243815  T
Q  109 tcgtcttggatgttaccaacaa 130  Q
    | ||||||||||| ||||||||    
T  5243814 tggtcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 5176817 - 5176940
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||| || ||| | |||||||||||||||||||  || ||| |||| || ||||||||||||||||||||| | ||||| || ||||    
T  5176817 ataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca 5176916  T
Q  107 tttcgtcttggatgttaccaacaa 130  Q
    ||| ||||||||||| ||||||||    
T  5176917 tttggtcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 5278644 - 5278767
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||| || ||| | |||||||||||||||||||  || ||| |||| || ||||||||||||||||||||| | ||||| || ||||    
T  5278644 ataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca 5278743  T
Q  107 tttcgtcttggatgttaccaacaa 130  Q
    ||| ||||||||||| ||||||||    
T  5278744 tttggtcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 5370677 - 5370786
Alignment:
Q  35 ggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataa 134  Q
    ||||||||||||||||||  |||||  |||||||  ||| |||||| |||| |||||| ||||| |||||||||| ||||||||||| |||||||||| |    
T  5370677 ggtcaaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaatta 5370776  T
Q  135 tctcccaccc 144  Q
    ||||||||||    
T  5370777 tctcccaccc 5370786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 5426017 - 5426122
Alignment:
Q  36 gtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataat 135  Q
    |||| ||||||||||||  || ||| |||| || ||||||||||| |||||||||||||||||  | ||||||| ||||||||||| |||||||||||||    
T  5426017 gtcacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaataat 5426116  T
Q  136 ctccca 141  Q
    ||||||    
T  5426117 ctccca 5426122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 5383431 - 5383538
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    ||||||||||| |||| || ||||||| |||| ||  |||||||||||||||||||||||||||| || ||||||  |||||||||||   |||||||||    
T  5383431 aggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaata 5383530  T
Q  134 atctccca 141  Q
    ||||||||    
T  5383531 atctccca 5383538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 5434135 - 5434243
Alignment:
Q  29 tactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    ||||||| |||||||||||||||| ||| ||| |||| || ||||||||||||||||  ||| | ||||| | |||||||  ||||||||||| ||||||    
T  5434135 tactgagatcaaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaac 5434234  T
Q  129 aaataatct 137  Q
    |||||||||    
T  5434235 aaataatct 5434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 5447665 - 5447793
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||||||  || | ||||| || |||||||||| ||||||| |||| |||| |||||||| ||| | |||||||||||| ||||| |    
T  5447665 ataacaacagtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctatta 5447764  T
Q  107 tttcgtcttggatgttaccaacaaataat 135  Q
    ||  ||||||||||| ||||| |||||||    
T  5447765 ttcggtcttggatgtcaccaagaaataat 5447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 5284392 - 5284258
Alignment:
Q  7 ataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 106  Q
    ||||||| ||||||||||||  || | ||||| ||||||||||||| |||| || |||| || ||||| ||| | ||| | ||||||||||| |  || |    
T  5284392 ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttatgagggactttcaagcgatgtgtttccattaataa 5284293  T
Q  107 tttcgtcttggatgttaccaacaaataatctccca 141  Q
    ||| ||| ||||||| | |||||||||||||||||    
T  5284292 ttttgtcatggatgtcagcaacaaataatctccca 5284258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 5350499 - 5350600
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    |||||||||||||||||||  || ||| |||| || ||||||||||| ||||||||||||||      |||||||   |||||||||| |||||||||||    
T  5350499 aggtcaaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtt------tatcattcattcttggatgtcaccaacaaata 5350592  T
Q  134 atctccca 141  Q
    ||| ||||    
T  5350593 atcaccca 5350600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 5137565 - 5137532
Alignment:
Q  111 gtcttggatgttaccaacaaataatctcccaccc 144  Q
    ||||||||||| ||||||||||||||||||||||    
T  5137565 gtcttggatgtcaccaacaaataatctcccaccc 5137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 5181699 - 5181643
Alignment:
Q  253 ctttggttggagtgtggatcagaacttcaactttcacaggacacaacaagaattttg 309  Q
    |||||| | |||||||| ||||||||||||||||| || ||||||  ||||||||||    
T  5181699 ctttgggttgagtgtggctcagaacttcaactttctcaagacacagaaagaattttg 5181643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 8902 - 8769
Alignment:
Q  8 taacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcat 107  Q
    |||||| |||||||||||| ||| | ||||||||||| |||| || ||||||| |||| ||  |||||||||||||||||||||||||||| ||||||||    
T  8902 taacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcat 8803  T
Q  108 ttcgtcttggatgttaccaacaaataatctccca 141  Q
    |  |||||||||||  ||||||||||||||||||    
T  8802 taagtcttggatgtctccaacaaataatctccca 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 8877714 - 8877815
Alignment:
Q  34 aggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaata 133  Q
    ||||||||||||||||||| ||||||| |||| || ||||||||||| || |||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  8877714 aggtcaaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaata 8877813  T
Q  134 at 135  Q
    ||    
T  8877814 at 8877815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 20838740 - 20838831
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    |||||||||||||||| ||| || || ||||||||||||||||| |||| |||||| ||||||||| |||||| ||||||||||| ||||||    
T  20838740 tcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 12599142 - 12599054
Alignment:
Q  40 aaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    ||||||||||||| ||| ||  ||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||| ||||||    
T  12599142 aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac 12599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 20812385 - 20812476
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    ||||||||||||| || ||| || || |||||||| |||||||| ||||||||||| ||||||||| |||||| ||||||||||| ||||||    
T  20812385 tcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaac 20812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 15803019 - 15803101
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggat 119  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||||| |||| |||||| ||||||||| |||||  |||||||||    
T  15803019 tcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgatgtttttccttctctcattaggtcttggat 15803101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 30417892 - 30418021
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||||||||  |||||  || ||||||||| | || || ||||||||||  | ||| || |||||||||| |||||||||  |||||||||| |||||||    
T  30417892 actggtatagaaaaagcacctttttccatagttagttcgaaaagcattgtttatatatccctgtgtggatttgaaggatttgcacgtgatgtttttcctt 30417991  T
Q  101 ctatcatttcgtcttggatgttaccaacaa 130  Q
     | ||||   ||||||||||| ||||||||    
T  30417992 gtctcatacggtcttggatgtcaccaacaa 30418021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 47986821 - 47986744
Alignment:
Q  61 ctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctc 138  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  47986821 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 47986744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 47996108 - 47996031
Alignment:
Q  61 ctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctc 138  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  47996108 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 47996031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 48005395 - 48005318
Alignment:
Q  61 ctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctc 138  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  48005395 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 48005318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 48014680 - 48014603
Alignment:
Q  61 ctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaataatctc 138  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  48014680 ctgtgcggctatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataatctc 48014603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 6905917 - 6905806
Alignment:
Q  19 cccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttgga 118  Q
    |||||||||||  | || |||||||||||||  | ||| || || || |||||||||||||| ||||||||| | ||||||||| |||||| ||||||||    
T  6905917 cccttttccattgttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttgga 6905818  T
Q  119 tgttaccaacaa 130  Q
    ||| ||||||||    
T  6905817 tgtcaccaacaa 6905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 32411173 - 32411083
Alignment:
Q  40 aaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaa 130  Q
    |||||||| | || ||| ||||| ||||||||||||||||| |||| ||| || ||||| ||| |||||| ||||| ||||| ||||||||    
T  32411173 aaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaa 32411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 3391644 - 3391536
Alignment:
Q  22 ttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 121  Q
    ||||| ||| |||| |||||||||||||||| ||| ||||| ||||||||||||||||| |||| | |||| ||||||||| |||||  |||||||||||    
T  3391644 ttttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgt 3391545  T
Q  122 taccaacaa 130  Q
     ||||||||    
T  3391544 caccaacaa 3391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 3262740 - 3262629
Alignment:
Q  16 gtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtctt 115  Q
    ||||||| ||| ||| | || |||||||||||||||| ||| || || ||||||||||| ||||| ||||||||||| ||||| |||||||||| |||||    
T  3262740 gtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtctt 3262642  T
Q  116 ggatgttaccaac 128  Q
    |||||| ||||||    
T  3262641 ggatgtcaccaac 3262629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 3364262 - 3364370
Alignment:
Q  22 ttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 121  Q
    ||||| ||| |||| |||||||||||||||| ||| ||||| ||||||||||||||||| |||| | |||| ||||||||| |||||  ||||||||| |    
T  3364262 ttttcgatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatat 3364361  T
Q  122 taccaacaa 130  Q
     ||||||||    
T  3364362 caccaacaa 3364370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 3407395 - 3407323
Alignment:
Q  58 tctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaa 130  Q
    ||||| ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  3407395 tctctatgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 31175955 - 31176046
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    ||||||||||||| || ||| ||||| ||||||||||||||||| ||| |||| || ||||||||| |||||| ||||||||||| ||||||    
T  31175955 tcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaac 31176046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 3314966 - 3315056
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaa 127  Q
    ||||||| |||||||| ||| || || |||| ||||||||| || ||||||||||| |||||||||||||||| ||||||||||| |||||    
T  3314966 tcaaaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaa 3315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 3325091 - 3325003
Alignment:
Q  39 aaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaa 127  Q
    |||||||||||||| ||| || || ||||||||||||||| | ||||  ||||| |||||||||||||||| ||||||||||| |||||    
T  3325091 aaaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa 3325003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 3286631 - 3286516
Alignment:
Q  14 aagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtc 113  Q
    ||||||||||||| ||  | || |||||||||||  ||| ||| || || ||||||||||||||||| |||| |||||| ||||  ||| |||||  |||    
T  3286631 aagtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatgatgtttttcaatctctcattaggtc 3286532  T
Q  114 ttggatgttaccaaca 129  Q
    |||||||| |||||||    
T  3286531 ttggatgtcaccaaca 3286516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 3398613 - 3398522
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaac 128  Q
    ||||||||||||| || ||| ||||| ||||||||| ||||||| ||   |||||| ||||||||| |||||| ||| ||||||| ||||||    
T  3398613 tcaaaaagcattgcatatatatctctatgtggatataaaggattatcgtctgatgtttttccttctctcatttggtcatggatgtcaccaac 3398522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 3267288 - 3267198
Alignment:
Q  40 aaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaa 130  Q
    |||||||| |||| ||| ||||| ||||||||||||||||| |||   ||||| |||| |||||| |||  ||||||||||| ||||||||    
T  3267288 aaaagcatcggatatatatctctatgtggatatgaaggattatcagaagatgtttttcattctattattcagtcttggatgtcaccaacaa 3267198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 18935465 - 18935589
Alignment:
Q  8 taacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcat 107  Q
    |||||| |||||||||| |  || | || ||||||||||||||||||||||| |||||||||| |||||||||  ||||| ||||||||||||| || ||    
T  18935465 taacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattat 18935564  T
Q  108 ttcgtcttggatgttaccaacaaat 132  Q
    |  |||||||||||  |||||||||    
T  18935565 tcagtcttggatgtctccaacaaat 18935589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 36213769 - 36213707
Alignment:
Q  70 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaat 132  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||    
T  36213769 tatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 36213707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 34724559 - 34724464
Alignment:
Q  37 tcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaat 132  Q
    ||||||||||||||||||||||| || ||||||| |||||||||  ||||| ||||||| ||||| || |||  |||||||||||  |||||||||    
T  34724559 tcaaaaagcattggatttatttcactttgtggatttgaaggatttgcacgtaatgtgttcccttcaattattcagtcttggatgtctccaacaaat 34724464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 6257 - 6146
Alignment:
Q  19 cccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttgga 118  Q
    |||||||||||| | || |||||||||||||  | ||| || || || |||||||||||||| ||||||||||| ||||||||  | |||| ||||||||    
T  6257 cccttttccatatttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttgga 6158  T
Q  119 tgttaccaacaa 130  Q
    ||| ||||||||    
T  6157 tgtcaccaacaa 6146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6731 - 6831
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| |||||||||||| |||||||| ||| |  | || |||| |||||||| ||||||| | ||||||| ||||||||| ||||| |||||||||||||    
T  6731 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6830  T
Q  101 c 101  Q
    |    
T  6831 c 6831  T

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Target: scaffold0813 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4835 - 4701
Alignment:
Q  1 actggtataacaaaagtgcccttttccatactgaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcctt 100  Q
    |||| ||||||||||||||| ||||| ||| | || | || || |||||||| ||||||||| ||||| | ||||||||| ||||| ||||| |||||||    
T  4835 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttcctt 4736  T
Q  101 ctatcatttcgtcttggatgttaccaacaaataat 135  Q
     | || ||  ||||||||||| |||| ||| ||||    
T  4735 ttctcgttcggtcttggatgtcaccatcaactaat 4701  T

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