View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_26 (Length: 289)
Name: NF21430_high_26
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 24695256 - 24695012
Alignment:
| Q |
18 |
ggttgtgtcttatcatagcagtgtgttaggtttgcaacaatttgggtggtattgtgctatggtattatttgctttgggattgtgtggatattatctagcc |
117 |
Q |
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| T |
24695256 |
ggttgtgtcttatcatagcagtgtgttaggtttgcaacaatttggatggtattgtgctatggtattatttgctttgggattgtgtggatattatctagct |
24695157 |
T |
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| Q |
118 |
aagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggcannnnnnnnnnnnnnnggctaggtgtaatttaaatgcaacaagcttttgagg |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24695156 |
aagatttg-----------tgggtggtttcaaaattgaggtggagggcattttttgtcttttttggctaggtgtaatttaaatgcaacaagcttttgagg |
24695068 |
T |
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| Q |
218 |
atttgttcattgtgcactatcttggttttatttcaaaatctttgtccgtttgtctc |
273 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
24695067 |
atttgttcattgtgcactatcttggttgtatttcaaaatctttatccgtttgtctc |
24695012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 24707790 - 24707724
Alignment:
| Q |
18 |
ggttgtgtctt-atcatagcagtgtgttaggtttgcaacaatttgggtggtattgtgctatggtatt |
83 |
Q |
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| T |
24707790 |
ggttgtgtctttatcgtagcagtgtgttaggtttgcagcagtttgggtggtactgtgctctggtatt |
24707724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 24707571 - 24707522
Alignment:
| Q |
182 |
ggctaggtgtaatttaaatgcaacaagcttttgaggatttgttcattgtg |
231 |
Q |
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| T |
24707571 |
ggctatgtgtaattcaaatgcaacaagtttttgaggatttgttcattgtg |
24707522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 13326127 - 13326066
Alignment:
| Q |
104 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13326127 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13326066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 13338463 - 13338402
Alignment:
| Q |
104 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
13338463 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
13338402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 32636327 - 32636373
Alignment:
| Q |
119 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
32636327 |
agatttgtggtcgatattttggtggtttcaaaattgagatggagggc |
32636373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 5668000 - 5667939
Alignment:
| Q |
104 |
gatattatctagccaagatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
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|||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
5668000 |
gatattatgtagctcagatttgtggtcgatattttggtggtttctaaattgaggtggagggc |
5667939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 51285929 - 51285975
Alignment:
| Q |
119 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
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|||||||| ||| |||||| ||||||||||||||||||||||||||| |
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| T |
51285929 |
agatttgttgtctatattttggtggtttcaaaattgaggtggagggc |
51285975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 48492007 - 48491961
Alignment:
| Q |
119 |
agatttgtggtcaatatttgggtggtttcaaaattgaggtggagggc |
165 |
Q |
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|||||||||||| |||||| ||| |||||||||||||| |||||||| |
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| T |
48492007 |
agatttgtggtcgatattttggttgtttcaaaattgagatggagggc |
48491961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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