View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21430_high_3 (Length: 622)
Name: NF21430_high_3
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Complemental strand, 10024877 - 10024292
Alignment:
| Q |
17 |
caaaggtacaagaaacttacatgtgccatctcacacactttatgctgacaatgtgatgatattttgcaaagggaaaaagtcttgccttctgactcttaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10024877 |
caaaggtacaagaaacttacatgtgccatctcacacactttatgctgacaatgtgatgatattttgcaaagggaaaaagtcttgccttctgactcttaaa |
10024778 |
T |
|
| Q |
117 |
caacttttcattgattatgcagcctgttatggttagattattaacccttttaagccaact---------ggttccattaatgctagcagactatctcagc |
207 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10024777 |
c---ttttcattgattatgcagcctgtt----ttagattattaacccttttaagccaactttgtacactggttccattaatgctagcagactatctcagc |
10024685 |
T |
|
| Q |
208 |
ttgttcattttctacgcttaaacattggttatcttccatgcattcatatacttaggtgtccctatctttagagggagaccataagctatttaaattgtct |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10024684 |
ttgttcatttgctacgcttaaacattggttatcttccatgcattcatatacttaggtgtccctatctttagagggagaccataagctatttaaattgcct |
10024585 |
T |
|
| Q |
308 |
tcttggaaagcctctctcctttctatagccgacacaactcaacttgtaatctctgtaatacaaagtatgatgatgcagatcctt---------------c |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10024584 |
tcttggaaagcctctctcctttctatagccgacaaaactcaacttgtaatctctgtaatacaaagtatgatgatgcagatcctttcagtttactccaggc |
10024485 |
T |
|
| Q |
393 |
cagtttcaatccttgtacaagaaatttcatatggagtggggacactgagaagagaaaggtggtaattgtagcatggcgcaaagtttgtaaacccaaagag |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10024484 |
cagtttcaatccttgtacaagaaatttcatatggagtggggacactgagaagagaaaggtggtaattgtagcatggcacaaagtttgtaaacccaaagag |
10024385 |
T |
|
| Q |
493 |
gaagggagtcttggtttaagatctcttacagtcctaaaatacagattggttatcatttcttttcttcaatatatggtgcataataaagtctcaaa |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
10024384 |
gaagggagtcttggtttaagatctcttacagtcctaaaatacagattggttatcatttcttttcttca--atatggtgcatcataaagtctcaaa |
10024292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University