View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21430_high_30 (Length: 274)
Name: NF21430_high_30
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_30 |
 | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1029 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3089 - 3328
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttt |
3188 |
T |
|
| Q |
101 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3189 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttattt |
3288 |
T |
|
| Q |
201 |
gattgatattatccaaaggtttggcattgaacactacttt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3289 |
gattgatattatccaaaggtttggcattgaacactacttt |
3328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 28580424 - 28580163
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaatttaaaatat---tttatttcaaagtactgatcaatctgca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||| ||| || ||||||||||| || |
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|
| T |
28580424 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacaattgttctaaatttagaatatctttttattgcaatgttctgatcaatctaca |
28580325 |
T |
|
| Q |
97 |
cttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagttttt |
196 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
28580324 |
cttttacattttcaggacgttacatatgtcaaacaagctttgatattcaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagttttt |
28580225 |
T |
|
| Q |
197 |
atttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28580224 |
atttgattgatattatccaaaggtttggcattgaacactactttaccgaggagatcaaagtg |
28580163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 26316428 - 26316168
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaa-atttaaaatat--tttatttcaaagtactgatcaatctgcac |
97 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||| |||||||||| || || |||| ||||||| |
|
|
| T |
26316428 |
ttaatttatagaatggtaagtattttaattgaagtacaaatatataaagttgttctagatttacaatatattttatttcaatgttctcatcattctgcac |
26316329 |
T |
|
| Q |
98 |
ttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagttttta |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
26316328 |
ttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaatatccgatggagagttttta |
26316229 |
T |
|
| Q |
198 |
tttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
|||||| ||||| ||||||||| || ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
26316228 |
tttgatcgatatcatccaaaggcttaacattgaacactactttgttgaagagatcaaagtg |
26316168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 68 - 258
Target Start/End: Complemental strand, 28586510 - 28586320
Alignment:
| Q |
68 |
ttttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgt |
167 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586510 |
ttttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgt |
28586411 |
T |
|
| Q |
168 |
taaaatcgaagatcccatggagagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28586410 |
taaaattgaagatccgatggaaagtttttatttgatcgatattatccaaaggtttggcattgaacactattttgctgaggagatcaaagtg |
28586320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 28575375 - 28575110
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaaat-----ttaaaatat---tttatttcaaagtactgatcaatc |
92 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| || ||| || || |||||||||| || |||||||||| |
|
|
| T |
28575375 |
ttaatttctagaatggtaagtattttaactgaagtacaaatatatacagttattctaaacttagttacaacatagctttatttcaatgttctgatcaatc |
28575276 |
T |
|
| Q |
93 |
tgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagt |
192 |
Q |
| |
|
|||||||| || ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
28575275 |
tgcactttgactttttcaggatgttacatatgttaagcaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagattcgatggagagt |
28575176 |
T |
|
| Q |
193 |
ttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28575175 |
ttttatttgatcgatatcatccaaaggtttggcattgaacactattttgctgaggagatcaaagtg |
28575110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 28568539 - 28568270
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta--------aaatat---tttatttcaaagtactgatc |
88 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | |||| |||||||||| | |||||| |
|
|
| T |
28568539 |
ttaatttctagaatggtaagtattttaattgaagtacgaatatatacagctattctaaatttagttacaacatatatagctttatttcaatattctgatc |
28568440 |
T |
|
| Q |
89 |
aatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatgga |
188 |
Q |
| |
|
|||||||||| ||||| ||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28568439 |
aatctgcactcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaaacttgttaaaatcgaagatccgatgga |
28568340 |
T |
|
| Q |
189 |
gagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || |||||| |
|
|
| T |
28568339 |
gagtttttatttgatggatattatccaaaggtttggtattgagcactattttgctgaggaaataaaagtg |
28568270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 20618671 - 20618514
Alignment:
| Q |
101 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttattt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| | |||||||||| | ||||||||||||| | |||||||| | |||| |||| |||| |
|
|
| T |
20618671 |
tacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttactagtgaagatccaactgagaattttcattt |
20618572 |
T |
|
| Q |
201 |
gattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaagtg |
258 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
20618571 |
gattgacatcatccaaaggcttggtattgaacactactttgttgaggaaatcaaagtg |
20618514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28586568 - 28586531
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtaca |
38 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
28586568 |
ttaatttccagaatggtaagtaatttaattggagtaca |
28586531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 3089 - 3270
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089 |
ttaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttt |
3188 |
T |
|
| Q |
101 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3189 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcc |
3270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 4358 - 4605
Alignment:
| Q |
10 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt----atttcaaagtactgatcaatctgcact |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| ||||||| || ||||||||| ||||| |
|
|
| T |
4358 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcact |
4455 |
T |
|
| Q |
99 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
198 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4456 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4555 |
T |
|
| Q |
199 |
ttgattgatattatccaaaggtttggcattgaacactactttgctgagga |
248 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4556 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgagga |
4605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 4562 - 4809
Alignment:
| Q |
10 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt----atttcaaagtactgatcaatctgcact |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| ||||||| || ||||||||| ||||| |
|
|
| T |
4562 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcact |
4659 |
T |
|
| Q |
99 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
198 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4660 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4759 |
T |
|
| Q |
199 |
ttgattgatattatccaaaggtttggcattgaacactactttgctgagga |
248 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4760 |
ttgatcgatattatccaaaggtttggtattgaacactattttgctgagga |
4809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 24071966 - 24071793
Alignment:
| Q |
83 |
ctgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcc |
182 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24071966 |
ctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttgatatttaagcaagtttatgagaaacttgttaaaatcgaagatcc |
24071867 |
T |
|
| Q |
183 |
catggagagtttttatttgattgatattatccaaaggtttggcattgaacactactttgctgaggagatcaaag |
256 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
24071866 |
gatggagtgtttttatttgatcgatatcatccaaaagtttgacattgaacactactttgttgacgagatcaaag |
24071793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24072044 - 24072016
Alignment:
| Q |
1 |
ttaatttccagaatggtaagtattttaat |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24072044 |
ttaatttccagaatggtaagtattttaat |
24072016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 2600707 - 2600758
Alignment:
| Q |
200 |
tgattgatattatccaaaggtttggcattgaacactactttgctgaggagat |
251 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
2600707 |
tgattgacattatccaaaggcttggcattgaacatcactttgctgaggagat |
2600758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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