View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_34 (Length: 239)
Name: NF21430_high_34
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10046097 - 10046318
Alignment:
| Q |
1 |
aagttgttccggcgaatttgccggcaccggtgctactttccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
10046097 |
aagttgttccggcgaatttgccggcaccggtgctactttccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgct |
10046196 |
T |
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| Q |
101 |
tgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10046197 |
tgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggt |
10046296 |
T |
|
| Q |
201 |
tttgattatgattcgatattag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10046297 |
tttgattatgattcgatattag |
10046318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 39676079 - 39676262
Alignment:
| Q |
39 |
tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga |
138 |
Q |
| |
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|||||||||||||| |||||||| |||| || || | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | || |
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| T |
39676079 |
tccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtga |
39676178 |
T |
|
| Q |
139 |
tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattag |
222 |
Q |
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| | |||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
39676179 |
ttaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattag |
39676262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 10873790 - 10873607
Alignment:
| Q |
39 |
tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga |
138 |
Q |
| |
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||||||||||| || ||||||||| |||| || || | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | |
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| T |
10873790 |
tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata |
10873691 |
T |
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| Q |
139 |
tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattag |
222 |
Q |
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| | |||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
10873690 |
ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattag |
10873607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 10878861 - 10878678
Alignment:
| Q |
39 |
tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga |
138 |
Q |
| |
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||||||||||| || ||||||||| |||| || || | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | |
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| T |
10878861 |
tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata |
10878762 |
T |
|
| Q |
139 |
tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattag |
222 |
Q |
| |
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| | |||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
10878761 |
ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattag |
10878678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 10883932 - 10883749
Alignment:
| Q |
39 |
tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga |
138 |
Q |
| |
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||||||||||| || ||||||||| |||| || || | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | |
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| T |
10883932 |
tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata |
10883833 |
T |
|
| Q |
139 |
tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattag |
222 |
Q |
| |
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| | |||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
10883832 |
ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattag |
10883749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 10866515 - 10866698
Alignment:
| Q |
39 |
tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga |
138 |
Q |
| |
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||||||||||| || ||||||||| |||| || || | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | |
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| T |
10866515 |
tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata |
10866614 |
T |
|
| Q |
139 |
tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattag |
222 |
Q |
| |
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| | |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| || |||| ||||||| |
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| T |
10866615 |
ttaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattag |
10866698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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