View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_36 (Length: 228)
Name: NF21430_high_36
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_36 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 16572940 - 16572745
Alignment:
| Q |
18 |
cacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16572940 |
cacctgaaggagcggcagtgcaatccaactgacacttcctaatcatacttctgtagctctttcattactcttagcaaggatggataatttctcagtcaac |
16572841 |
T |
|
| Q |
118 |
tcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgttattcatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
16572840 |
tcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcattatgctcgtcattcatc |
16572745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 16874822 - 16874621
Alignment:
| Q |
18 |
cacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaac |
117 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16874822 |
cacctgtaggagcggcagtgcaatccaaccgacacttcctaaccatgcttctgtagctctttcattactcttagcaaggatggataatttctcagtcaat |
16874723 |
T |
|
| Q |
118 |
tcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgttattcatctcac |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
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| T |
16874722 |
tcgaacgccaaagcctgcaccatagagagttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcatcattcatcacac |
16874623 |
T |
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| Q |
218 |
tc |
219 |
Q |
| |
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|| |
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| T |
16874622 |
tc |
16874621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 16580958 - 16580760
Alignment:
| Q |
21 |
ctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcg |
120 |
Q |
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||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
16580958 |
ctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcg |
16580859 |
T |
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| Q |
121 |
aacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgttattcatctcactc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
16580858 |
aacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgtaattcatcacactc |
16580760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 16614422 - 16614620
Alignment:
| Q |
21 |
ctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcg |
120 |
Q |
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||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
16614422 |
ctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcg |
16614521 |
T |
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| Q |
121 |
aacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgttattcatctcactc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
16614522 |
aacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctcgtaattcatcacactc |
16614620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 233279 - 233427
Alignment:
| Q |
55 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
154 |
Q |
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||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
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| T |
233279 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
233378 |
T |
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| Q |
155 |
ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc |
203 |
Q |
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||| ||| | ||||||||||| |||||||||||| ||||||||| |||| |
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| T |
233379 |
ttctgaaaataatgcacccagttggctgatcccagcttgcatgaagctc |
233427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 21629656 - 21629507
Alignment:
| Q |
69 |
tgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
168 |
Q |
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|||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||| ||||||||| | ||| |||||||||||||||| |||||| |
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| T |
21629656 |
tgtagctctttcattactctttgcaaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaatacaatg |
21629558 |
T |
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| Q |
169 |
cacccagatggctgatcccaccttgcatgatgctcgttattcatctcactc |
219 |
Q |
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||||||||||| |||||||| | |||||| ||||| ||||||| ||||| |
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| T |
21629557 |
cacccagatggttgatcccagccagcatgaagctcgccattcatcacactc |
21629507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 7392216 - 7392068
Alignment:
| Q |
55 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
154 |
Q |
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||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
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| T |
7392216 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
7392117 |
T |
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| Q |
155 |
ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc |
203 |
Q |
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||||||| | ||||||||||| ||| |||||||| ||||||||| |||| |
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| T |
7392116 |
ttcggaaaataatgcacccagttggttgatcccagcttgcatgaagctc |
7392068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 48298405 - 48298543
Alignment:
| Q |
65 |
cttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacac |
164 |
Q |
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|||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||| ||| | |
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| T |
48298405 |
cttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaat |
48298504 |
T |
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| Q |
165 |
aatgcacccagatggctgatcccaccttgcatgatgctc |
203 |
Q |
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||||||||||| |||||||||||| ||||||||| |||| |
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| T |
48298505 |
aatgcacccagttggctgatcccagcttgcatgaagctc |
48298543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 10841 - 10939
Alignment:
| Q |
90 |
tgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatccca |
188 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||||||| |||||||| || ||||| |
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| T |
10841 |
tgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttggtccca |
10939 |
T |
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