View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_4 (Length: 563)
Name: NF21430_high_4
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 435 - 549
Target Start/End: Complemental strand, 21234822 - 21234708
Alignment:
| Q |
435 |
tcgtgcatgccattagtgagagtgtttgtgacatcaagattgtcaaatgttattgtcaacttgttggtcaggatgcatcagatggatatgaatgacttga |
534 |
Q |
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| T |
21234822 |
tcgtgcatgccattagtgagagtgtttgtgacatcaagattgtcaaatgttattttcaacttgttggtcaggatgcatcagatgaatatgaatgacttga |
21234723 |
T |
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| Q |
535 |
gagacaatttattga |
549 |
Q |
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| T |
21234722 |
gagacaatttattga |
21234708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 21234950 - 21234839
Alignment:
| Q |
19 |
taatgagaacattgataattatgaacatgaggattataagaaagatatataaataatgatgattatggaatacgatgaacatggaatacgagtagggaaa |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
21234950 |
taatgagaacattgatgattatgaacatgaggattataagaaagatatataaataatgatcattatggaatacgatgaac-----atacgagtagggaaa |
21234856 |
T |
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| Q |
119 |
tcacatagggttaggat |
135 |
Q |
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| T |
21234855 |
tcacatagggttaggat |
21234839 |
T |
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