View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_high_6 (Length: 495)
Name: NF21430_high_6
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 56401529 - 56401155
Alignment:
| Q |
19 |
gctccggcacggaggagacgcattctggcacggtggtcgcggaaaataagctctgacaggaactctggtttagggtttatgtttctggattctagaggag |
118 |
Q |
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| T |
56401529 |
gctccggcacggaggagacgcattctggcacggtggtcgcggaaaataagctctgacaggaactctggtttagggtttatgtttctggattctagaggaa |
56401430 |
T |
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| Q |
119 |
tccatccatcggcttaaaatcttggctgtaggtagtaataaaaaattaacttggtgcacacacaaaatgtctaagtcataccatcttgttttgaattcaa |
218 |
Q |
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| T |
56401429 |
tccatccatgggcttaaaatcttggttgtaggtagtaataaaaaattaacttggtgcacacacaaaatgtctaagtcataccatcttgttttgaattcaa |
56401330 |
T |
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| Q |
219 |
ccaagaaatgaaataagactaaaacagggagcctataatgatatgaaaatgagcatcgattatacaatgcttattgcgtgtacatacataacagtttgat |
318 |
Q |
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| T |
56401329 |
ccaagaaatgaaataagactaaaacagggagcctataatgatatgaaaatgagcatcgattatacaatgcttattgcgtgtacatacataacagtttgat |
56401230 |
T |
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| Q |
319 |
tctaatacagcaccccccnnnnnnntaaacatctcctatattacacgcattttggggggacagggtttagtatgc |
393 |
Q |
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| T |
56401229 |
tctaatacagcaccccccaaaaaaataaacatctcctatattacacgcattttggggggacagggtttagtatgc |
56401155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 479
Target Start/End: Complemental strand, 56401091 - 56401060
Alignment:
| Q |
448 |
ttgcaatactctcttgactatttacaaacaca |
479 |
Q |
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| T |
56401091 |
ttgcaatactctcttgactatttacaaacaca |
56401060 |
T |
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