View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21430_high_7 (Length: 490)

Name: NF21430_high_7
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21430_high_7
NF21430_high_7
[»] chr4 (14 HSPs)
chr4 (1-490)||(46222781-46223270)
chr4 (197-397)||(46343757-46343942)
chr4 (5-74)||(46343687-46343756)
chr4 (110-182)||(36954162-36954234)
chr4 (110-182)||(8690239-8690311)
chr4 (110-182)||(27296847-27296919)
chr4 (110-182)||(40150498-40150570)
chr4 (110-182)||(52031232-52031304)
chr4 (110-182)||(9692987-9693059)
chr4 (110-182)||(14149818-14149890)
chr4 (122-182)||(23518275-23518335)
chr4 (110-182)||(28520729-28520801)
chr4 (110-182)||(48968208-48968280)
chr4 (110-182)||(53815721-53815793)
[»] chr7 (10 HSPs)
chr7 (110-178)||(8742678-8742746)
chr7 (110-182)||(24304281-24304353)
chr7 (127-182)||(29779006-29779061)
chr7 (110-180)||(14818363-14818433)
chr7 (110-180)||(15265361-15265431)
chr7 (110-180)||(31475838-31475908)
chr7 (148-182)||(38025366-38025400)
chr7 (111-163)||(16776976-16777029)
chr7 (111-180)||(41417274-41417343)
chr7 (110-182)||(41139112-41139184)
[»] chr5 (5 HSPs)
chr5 (105-182)||(19982241-19982318)
chr5 (110-182)||(4674813-4674885)
chr5 (110-182)||(36045132-36045204)
chr5 (148-182)||(26169048-26169082)
chr5 (110-182)||(1463896-1463968)
[»] chr3 (16 HSPs)
chr3 (110-182)||(38555026-38555097)
chr3 (126-182)||(55195875-55195931)
chr3 (112-182)||(36476384-36476454)
chr3 (99-180)||(22854622-22854703)
chr3 (111-182)||(28226186-28226257)
chr3 (144-182)||(29507242-29507280)
chr3 (127-181)||(44953176-44953230)
chr3 (122-182)||(362968-363028)
chr3 (110-182)||(7448361-7448433)
chr3 (110-182)||(7456503-7456575)
chr3 (110-182)||(9625008-9625080)
chr3 (114-182)||(14868710-14868778)
chr3 (110-182)||(24559414-24559486)
chr3 (110-182)||(27183679-27183751)
chr3 (114-154)||(36799700-36799740)
chr3 (126-182)||(37059472-37059528)
[»] chr2 (8 HSPs)
chr2 (111-182)||(44187729-44187800)
chr2 (127-181)||(4529778-4529832)
chr2 (127-181)||(32944088-32944142)
chr2 (110-182)||(21970437-21970509)
chr2 (110-182)||(29035001-29035073)
chr2 (110-182)||(32527075-32527147)
chr2 (126-182)||(36426870-36426926)
chr2 (110-182)||(43870978-43871050)
[»] scaffold0308 (1 HSPs)
scaffold0308 (110-182)||(7101-7173)
[»] scaffold0070 (1 HSPs)
scaffold0070 (110-182)||(12590-12662)
[»] chr8 (6 HSPs)
chr8 (110-182)||(5323947-5324019)
chr8 (110-182)||(35301161-35301233)
chr8 (112-182)||(22426426-22426496)
chr8 (110-182)||(2696558-2696630)
chr8 (110-182)||(2800044-2800116)
chr8 (110-182)||(18009713-18009785)
[»] chr6 (3 HSPs)
chr6 (119-159)||(2802151-2802191)
chr6 (98-182)||(3230949-3231034)
chr6 (110-182)||(9064891-9064963)
[»] chr1 (10 HSPs)
chr1 (110-182)||(25819210-25819282)
chr1 (111-182)||(38021277-38021348)
chr1 (129-175)||(5315594-5315640)
chr1 (127-181)||(9931113-9931167)
chr1 (148-182)||(48110554-48110588)
chr1 (94-182)||(16110001-16110090)
chr1 (110-182)||(17350086-17350158)
chr1 (127-179)||(30649121-30649173)
chr1 (110-182)||(35111675-35111746)
chr1 (110-182)||(52833104-52833176)


Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 46222781 - 46223270
Alignment:
Q  1 tacaacctcttttatcctgctacttcttaactacctccgcaccaaccaccaaaccactttatatctctcacaatttctttgannnnnnngtcaaggttgt 100  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||       |||||||||||    
T  46222781 tacaacctcttttatccttctacttcttaactacctctgccccaaccaccaaaccactttatatctttcacaatttctttgatttttttgtcaaggttgt 46222880  T
Q  101 ctagtagttgaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcattttgttagtcacgggacac 200  Q
    ||||| ||||||||||||||||||| |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46222881 ctagtggttgaaattcacttttaaagtgaataaatagggtatctggagttcgaactccaactcctgcatataataatgcattttgttagtcacgggacac 46222980  T
Q  201 atatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataattacatagaacagatttgaagattatttattttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46222981 atatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataattacatagaacagatttgaagattatttattttat 46223080  T
Q  301 tttatattaagagaagtagtattaaaaaagtacaagttaaggtactgaaattaacccaatataaataaagagtgcaacatacaagaatcaacaacttnnn 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  46223081 tttatattaagagaagtagtattaaaaaagtacaagttaaggtactgaaattaacccaatataaataaagagtgcaacatacaagaatcaacaacttaaa 46223180  T
Q  401 nnnnnttagtttaaaacccattacccaactaacaagagctcgtagcatcgctcatcgagagacaaggagagagaagttatggccccactc 490  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46223181 aaaaattagtttaaaacccattacccaactaacaagagctcgtagcatcgctcatcgagagacaaggagagagaagttatggccccactc 46223270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 197 - 397
Target Start/End: Original strand, 46343757 - 46343942
Alignment:
Q  197 acacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaactttatgataattacatagaacagatttgaagattatttatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||  |||   |||||||| ||||||||    
T  46343757 acacatatcaattcagttcatattttatatttataaaattattaaaataagaggctaac-------------catcaaaccactttgaagactatttatt 46343843  T
Q  297 ttattttatattaagagaagtagtattaaaa-aagtacaagttaaggtactgaaattaacccaatataaataaagagtgcaacatacaagaatcaacaac 395  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||| |||||||||| || |||||||    
T  46343844 ttattt-atattaaaagaagtggtattaaaaaaagtacaagttaaggtactcaaattaacccaatataaat--agagtacaacatacaaaaaccaacaac 46343940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 46343687 - 46343756
Alignment:
Q  5 acctcttttatcctgctacttcttaactacctccgcaccaaccaccaaaccactttatatctctcacaat 74  Q
    |||| ||||||| | ||||||||||||| ||||| | | ||||||||||||||||| |||||||||||||    
T  46343687 accttttttatcgttctacttcttaactccctccaccctaaccaccaaaccactttgtatctctcacaat 46343756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 36954234 - 36954162
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| |||||||||| ||| |  || |||||||| || || ||||||||||||||||||||    
T  36954234 gaaattcacttttaaagtgaataaatggggtgtccggggttcgaaccccgacccctgcatataataatgcatt 36954162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 8690311 - 8690239
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| || || ||||||||||||||||||||    
T  8690311 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcatt 8690239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 27296919 - 27296847
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||| ||||||||| |||||||||||| | || || |||||||| ||||| |||  |||||||||||||||    
T  27296919 gaaatttacttttaaagtgaataaatgagatgttcggggttcgaaccccaacccctatatataataatgcatt 27296847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 40150570 - 40150498
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| |||||| |  || |||||||| || || |||| |||||||||||||||    
T  40150570 gaaattcacttttaaagtgaataagtgaggtgtccggggttcgaaccccgacccctgtatataataatgcatt 40150498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 52031304 - 52031232
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| | ||| |||||||| || || |||||||||| |||||||||    
T  52031304 gaaattcacttttaaagtgaataagtggggtgtctggggttcgaaccccgacccctgcatatactaatgcatt 52031232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9693059 - 9692987
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  9693059 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 9692987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 14149890 - 14149818
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  14149890 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 14149818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 23518335 - 23518275
Alignment:
Q  122 taaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||| ||||| |||||| |  ||||||| |||||| |||||| ||||||||||||||||    
T  23518335 taaaattaataagtgaggtgtccggagttcaaactccgactcctacatataataatgcatt 23518275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 28520729 - 28520801
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  28520729 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 28520801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 48968208 - 48968280
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  48968208 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 48968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 53815793 - 53815721
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||| | ||||||| || ||| |  || |||||||| ||| | ||||||||||||||||||||    
T  53815793 gaaattcacttttatagtgaataagtggggtgtccggggttcgaaccccagcccctgcatataataatgcatt 53815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 8742746 - 8742678
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatg 178  Q
    |||||||||||||||| ||||||||||  |||| |||  ||||||||||||| ||||||||||||||||    
T  8742746 gaaattcacttttaaagtgaataaatggagtatctgggattcgaactccaacccctgcatataataatg 8742678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 24304281 - 24304353
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||| ||||||||| |||||||||| ||| || ||||||||||| || || ||||||||||||||||||||    
T  24304281 gaaatttacttttaaagtgaataaatggggtgttcggagttcgaaccccgacccctgcatataataatgcatt 24304353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 29779061 - 29779006
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||    
T  29779061 tgaataagtgaagtattcggagttcgaactccgacccctgcatataataatgcatt 29779006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 14818363 - 14818433
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgca 180  Q
    |||||||||||||||| ||||||| || ||| ||||| ||| |||| || || ||||||||||||||||||    
T  14818363 gaaattcacttttaaagtgaataagtggggtgtttggggtttgaaccccgacccctgcatataataatgca 14818433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 15265361 - 15265431
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgca 180  Q
    |||||||||||||||| ||||||| || ||| ||||| ||| |||| || || ||||||||||||||||||    
T  15265361 gaaattcacttttaaagtgaataagtggggtgtttggggtttgaaccccgacccctgcatataataatgca 15265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 31475838 - 31475908
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgca 180  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||| | ||||||||||||||||||    
T  31475838 gaaattcacttttaaagtgaataagtggggtgtcaggggttcgaaccccagcccctgcatataataatgca 31475908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 38025400 - 38025366
Alignment:
Q  148 gttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||| ||||||||||||||||||||||||||    
T  38025400 gttcgaaccccaactcctgcatataataatgcatt 38025366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 16776976 - 16777029
Alignment:
Q  111 aaattcactttt-aaaatgaataaatgaggtatttggagttcgaactccaactc 163  Q
    |||||||||||| ||||||||||||| |||| || ||||||||||| |||||||    
T  16776976 aaattcactttttaaaatgaataaataaggtgttaggagttcgaaccccaactc 16777029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 41417274 - 41417343
Alignment:
Q  111 aaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgca 180  Q
    ||||||||||||||| ||||||| || ||| | ||| |||||||| || || |||||||||||| |||||    
T  41417274 aaattcacttttaaagtgaataagtggggtgtctggggttcgaaccccgacccctgcatataatgatgca 41417343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 41139184 - 41139112
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| ||| || |  ||  ||||||| || || ||||||||||||||||||||    
T  41139184 gaaattcacttttaaagtgaataagtgaagtgtccgggattcgaaccccgacccctgcatataataatgcatt 41139112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 19982241 - 19982318
Alignment:
Q  105 tagttgaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||| |||||||||| ||| || |||||||| ||| || || ||||||||| |||| ||||||||||||||||||||    
T  19982241 tagttaaaattcacttataagataaataaatggggtgttcggggttcgaacttcaacccctgcatataataatgcatt 19982318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 4674813 - 4674885
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| || || ||||||||||||||||||||    
T  4674813 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcatt 4674885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 36045132 - 36045204
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| || || ||||||||||||||||||||    
T  36045132 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcatt 36045204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 26169048 - 26169082
Alignment:
Q  148 gttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  26169048 gttcgaactccaacccctgcatataataatgcatt 26169082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 1463968 - 1463896
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  1463968 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 1463896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 38555026 - 38555097
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| |||||| ||||  |||||||| || || ||||||||||||||||||||    
T  38555026 gaaattcacttttaaagtgaataagtgaggtgtttgaggttcgaac-ccgacccctgcatataataatgcatt 38555097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 55195875 - 55195931
Alignment:
Q  126 atgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||||| || ||||||||||||||||| ||| ||||| ||||||||||    
T  55195875 atgaataaatgaggtgttcggagttcgaactccaacccctacatatgataatgcatt 55195931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 36476454 - 36476384
Alignment:
Q  112 aattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||| ||||||| || ||| || || |||||||||||  | ||||||||||||||||||||    
T  36476454 aattcacttttaaagtgaataagtggggtgttcggggttcgaactccggcccctgcatataataatgcatt 36476384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 22854703 - 22854622
Alignment:
Q  99 gtctagtagttgaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgca 180  Q
    ||||||| |||| |||||| ||||||| |||||||||| | | ||||| ||| ||| ||| || ||||||||||||||||||    
T  22854703 gtctagtggttggaattcatttttaaagtgaataaatgggatgtttggggtttgaagtccgacccctgcatataataatgca 22854622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 28226186 - 28226257
Alignment:
Q  111 aaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||| ||||||||| ||||||| || ||| || ||  ||||||| ||||| ||||||||||||||||||||    
T  28226186 aaatttacttttaaagtgaataagtggggtgttcgggattcgaaccccaacccctgcatataataatgcatt 28226257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 29507280 - 29507242
Alignment:
Q  144 tggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  29507280 tggagttcgaaccacaactcctgcatataataatgcatt 29507242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 44953176 - 44953230
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcat 181  Q
    |||||||||||||| | ||| ||||||||  |||| |||||||||||||||||||    
T  44953176 tgaataaatgaggtgtctggggttcgaacatcaacccctgcatataataatgcat 44953230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 363028 - 362968
Alignment:
Q  122 taaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||| ||||||| || |||||  || ||||||||||| || ||||||||||||||||||||    
T  363028 taaagtgaataagtggggtatccggggttcgaactccgacccctgcatataataatgcatt 362968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 7448361 - 7448433
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||| || ||||||| || ||||| ||| |||||||  ||  | ||||||||||||||||||||    
T  7448361 gaaattcacttttgaagtgaataagtggggtatctggggttcgaatcccggcccctgcatataataatgcatt 7448433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 7456503 - 7456575
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||| || ||||||| || ||||| ||| |||||||  ||  | ||||||||||||||||||||    
T  7456503 gaaattcacttttgaagtgaataagtggggtatctggggttcgaatcccggcccctgcatataataatgcatt 7456575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9625080 - 9625008
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  9625080 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 9625008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 14868778 - 14868710
Alignment:
Q  114 ttcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||| ||||||| || ||| || || |||||||| ||  | ||||||||||||||||||||    
T  14868778 ttcacttttaaagtgaataagtggggtgttcggggttcgaaccccggcccctgcatataataatgcatt 14868710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 24559486 - 24559414
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| || || |||||||||||| |||||||    
T  24559486 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataattatgcatt 24559414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 27183679 - 27183751
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  27183679 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 27183751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 36799740 - 36799700
Alignment:
Q  114 ttcacttttaaaatgaataaatgaggtatttggagttcgaa 154  Q
    |||||||||||| ||||||||||||| |||| |||||||||    
T  36799740 ttcacttttaaagtgaataaatgaggaatttagagttcgaa 36799700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 37059528 - 37059472
Alignment:
Q  126 atgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||| |||||| || ||  ||||||||||| | ||||||||||||||||||||    
T  37059528 atgaataagtgaggtgttcgggattcgaactccagcccctgcatataataatgcatt 37059472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 44187800 - 44187729
Alignment:
Q  111 aaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||||| ||||||| || ||| | ||| |||||||| || || ||||||||||||||||||||    
T  44187800 aaattcacttttaaagtgaataagtggggtgtctggggttcgaaccccgacccctgcatataataatgcatt 44187729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 4529778 - 4529832
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcat 181  Q
    ||||||| || ||| || |||||||||||||| || |||||||||||||||||||    
T  4529778 tgaataagtggggtgttcggagttcgaactccgacccctgcatataataatgcat 4529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 32944142 - 32944088
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcat 181  Q
    ||||||| |||||| || |||||| ||||||| | ||||||||||||||||||||    
T  32944142 tgaataagtgaggtgttcggagtttgaactccgattcctgcatataataatgcat 32944088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 21970437 - 21970509
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| |||||||  | |||||  || |||||||| || |  ||||||||||||||||||||    
T  21970437 gaaattcacttttaaagtgaataagcggggtatccggggttcgaaccccgatccctgcatataataatgcatt 21970509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 29035073 - 29035001
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  29035073 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 29035001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 32527075 - 32527147
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || | | | ||| |||||||| ||  | ||||||||||||||||||||    
T  32527075 gaaattcacttttaaagtgaataagtgggttgtctggggttcgaaccccggcccctgcatataataatgcatt 32527147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 36426870 - 36426926
Alignment:
Q  126 atgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||| || ||| || ||||||||||| ||||| ||| ||||||||||||||||    
T  36426870 atgaataagtggggtgttcggagttcgaaccccaacccctacatataataatgcatt 36426926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 43871050 - 43870978
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  ||  ||||||| ||  ||||||||||||||||||||||    
T  43871050 gaaattcacttttaaagtgaataagtggggtgtccgggattcgaaccccggctcctgcatataataatgcatt 43870978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 7173 - 7101
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| |||||||||| ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  7173 gaaattcacttttaaagtgaataaatggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 7101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 12662 - 12590
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| |||||||||| |||||  |  |||||||| |  || ||||||||||||||||||||    
T  12662 gaaattcacttttaaagtgaataaatggggtatccgaggttcgaaccctgacccctgcatataataatgcatt 12590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 5324019 - 5323947
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| |||||  |  || |||||||| || || ||||||||||||||||||||    
T  5324019 gaaattcacttttaaagtgaataactgaggagtccggggttcgaaccccgacccctgcatataataatgcatt 5323947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 35301161 - 35301233
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| |  ||| |  ||||||||||| || || ||||||||||||||||||||    
T  35301161 gaaattcacttttaaagtgaataagtagggtgtccggagttcgaaccccgacccctgcatataataatgcatt 35301233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 22426496 - 22426426
Alignment:
Q  112 aattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||| |||||||||| ||| |  || ||||||||  |||| ||| ||||||||||||||||    
T  22426496 aattcacttttaaagtgaataaatggggtgtcaggggttcgaacctcaacccctacatataataatgcatt 22426426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 2696630 - 2696558
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  2696630 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 2696558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 2800116 - 2800044
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  2800116 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 2800044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 18009713 - 18009785
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| ||| ||||| ||  ||||||| ||    ||||||||||||||||||||    
T  18009713 gaaattcacttttaaagtgaataagtgaagtattcgggattcgaaccccggaccctgcatataataatgcatt 18009785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 2802191 - 2802151
Alignment:
Q  119 ttttaaaatgaataaatgaggtatttggagttcgaactcca 159  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  2802191 ttttaaagtgaataaatgaggtgtttggagttcgaactcca 2802151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 3230949 - 3231034
Alignment:
Q  98 tgtctagtagttgaaattcac-ttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||| |||| ||||||| ||||||  |||||||||| ||| | || | |||||||| |||||||||||| ||| ||||||||    
T  3230949 tgtctagtggttggaattcaccttttaaggtgaataaatggggtgtctgaaattcgaacttcaactcctgcatgtaacaatgcatt 3231034  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9064963 - 9064891
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| | ||||| || ||| | ||| |||||||| ||  | ||||||||||||||||||||    
T  9064963 gaaattcacttttaaagtaaataagtggggtgtctggggttcgaaccccggcccctgcatataataatgcatt 9064891  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 25819282 - 25819210
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || |||||  || |||||||| ||  ||||| ||||||||||||||||    
T  25819282 gaaattcacttttaaagtgaataagtggggtatccggggttcgaaccccggctcctacatataataatgcatt 25819210  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 38021348 - 38021277
Alignment:
Q  111 aaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    ||||||||||||||| ||||||| || ||| |  || |||||||||||  | ||||||||||||||||||||    
T  38021348 aaattcacttttaaagtgaataagtggggtgtccggggttcgaactccggcccctgcatataataatgcatt 38021277  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 5315640 - 5315594
Alignment:
Q  129 aataaatgaggtatttggagttcgaactccaactcctgcatataata 175  Q
    |||||||||||||||||| |||||||| |||||  ||||||||||||    
T  5315640 aataaatgaggtatttggggttcgaaccccaacctctgcatataata 5315594  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 9931167 - 9931113
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcat 181  Q
    ||||||| || ||| ||||| |||||||||||| ||| |||||||||||||||||    
T  9931167 tgaataagtggggtgtttggggttcgaactccagctcttgcatataataatgcat 9931113  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 48110588 - 48110554
Alignment:
Q  148 gttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||| ||||||||||||||||||||    
T  48110588 gttcgaactccaacccctgcatataataatgcatt 48110554  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 16110001 - 16110090
Alignment:
Q  94 aggttgtctagtagttgaaattcacttt-taaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||| ||||||| |||  |||||||||| || ||||||||| ||  || ||||| ||||||||  |||| ||||||||||||||||||||    
T  16110001 aggtagtctagttgttagaattcactttatagaatgaataagtggagtctttggggttcgaacctcaacccctgcatataataatgcatt 16110090  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 17350158 - 17350086
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| |  || |||||||| ||  | ||||||||||||||||||||    
T  17350158 gaaattcacttttaaagtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcatt 17350086  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 30649173 - 30649121
Alignment:
Q  127 tgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgc 179  Q
    ||||||| || ||| | ||| |||||||| |||||||||||||||||||||||    
T  30649173 tgaataagtggggtgtctggggttcgaaccccaactcctgcatataataatgc 30649121  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 35111746 - 35111675
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| ||||||| || ||| || || |||||||| ||  | ||||||||||||||||||||    
T  35111746 gaaattcacttttaaagtgaataagtggggtgttaggggttcgaac-cccgcccctgcatataataatgcatt 35111675  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 52833104 - 52833176
Alignment:
Q  110 gaaattcacttttaaaatgaataaatgaggtatttggagttcgaactccaactcctgcatataataatgcatt 182  Q
    |||||||||||||||| |||||||||| | | |  || |||||||| ||  | ||||||||||||||||||||    
T  52833104 gaaattcacttttaaagtgaataaatgggatgtccggggttcgaaccccggcccctgcatataataatgcatt 52833176  T

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