View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_11 (Length: 454)
Name: NF21430_low_11
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Complemental strand, 30978145 - 30977716
Alignment:
| Q |
21 |
ggagcttcatctctagctagttatgtaacaaacaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgatgtg |
120 |
Q |
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| T |
30978145 |
ggagcttcatctctagctagttatgtaacaatcaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgatgtg |
30978046 |
T |
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| Q |
121 |
caacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttcttttgta |
220 |
Q |
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| T |
30978045 |
caacttcagatatatttgttttaactttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttcttttgta |
30977946 |
T |
|
| Q |
221 |
atttgttgtttaagttggatgagttcttttgtc-nnnnnnnnnngttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaatttttc |
319 |
Q |
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| T |
30977945 |
atttgttgtttaagttggatgagttcttttgtcaaaaaaaaaaagttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaatttttc |
30977846 |
T |
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| Q |
320 |
aaaccataattcagaaaatattgtaagtgatgaaatcttcaaagatatgcatcatttctttttcataatgttatatatatgtcttatcaattagcaatca |
419 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30977845 |
aaaccatgattcagaaaatattgtaagtgatgaaatcttcaaagatatgcattatttctttttcataatgttatatatatgtcttatcaattagcaatca |
30977746 |
T |
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| Q |
420 |
tattttgattttggtctttgttcttctcac |
449 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30977745 |
tattttgattttggtctttgttcttctcac |
30977716 |
T |
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