View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21430_low_14 (Length: 430)

Name: NF21430_low_14
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21430_low_14
NF21430_low_14
[»] chr5 (14 HSPs)
chr5 (10-414)||(10548793-10549197)
chr5 (59-414)||(10556920-10557275)
chr5 (62-381)||(10748872-10749191)
chr5 (203-269)||(19607863-19607929)
chr5 (219-380)||(10609744-10609905)
chr5 (59-123)||(10718752-10718816)
chr5 (13-113)||(19607673-19607773)
chr5 (59-113)||(9838182-9838236)
chr5 (219-313)||(10563128-10563222)
chr5 (59-97)||(10764951-10764989)
chr5 (63-156)||(10609968-10610061)
chr5 (219-399)||(10742716-10742896)
chr5 (59-105)||(10594067-10594113)
chr5 (219-313)||(11049886-11049980)
[»] chr6 (4 HSPs)
chr6 (74-121)||(12897858-12897905)
chr6 (74-121)||(12905479-12905526)
chr6 (59-119)||(12946936-12946996)
chr6 (74-110)||(12956382-12956418)
[»] chr2 (1 HSPs)
chr2 (74-110)||(17925275-17925311)
[»] chr3 (1 HSPs)
chr3 (212-310)||(31469166-31469264)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Complemental strand, 10549197 - 10548793
Alignment:
Q  10 acaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatatttcttgtggaatatctccctccaaattgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549197 acaaaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatatttcttgtggaatatctccctccaaattgtt 10549098  T
Q  110 ataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549097 ataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttt 10548998  T
Q  210 tgaagagacccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaattt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10548997 tgaagagacccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaattt 10548898  T
Q  310 ctccagagaacgagttattggcgagatagagttcctttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggtt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10548897 ctccagagaacgagttattggcgagatagagttcctttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggtt 10548798  T
Q  410 gacgt 414  Q
    |||||    
T  10548797 gacgt 10548793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 59 - 414
Target Start/End: Complemental strand, 10557275 - 10556920
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatgga 158  Q
    ||||| ||| || |||||||||||||| |||||||||||||| || ||||||  |||||  |||| |  | | ||   ||||||||| |||| ||||||     
T  10557275 caagtgttttaggcgacatatttcttggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatggt 10557176  T
Q  159 gggactcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaattgttccctc 258  Q
    ||||||| |||  |||||  ||||| |  |||| | |||| || ||||||||||||||| || |||||||||||||||||||| |||||||| ||||| |    
T  10557175 gggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttttccgatcaaattattcccac 10557076  T
Q  259 tcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaacgagttattggcgagatagagttcctttaattgtaacaa 358  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  10557075 tcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaa 10556976  T
Q  359 ctgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgt 414  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10556975 ctgacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgt 10556920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 381
Target Start/End: Original strand, 10748872 - 10749191
Alignment:
Q  62 gtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatggaggg 161  Q
    ||||||||||  |||||||||||||||||| |||||||  || |||||||| | ||| | ||  ||||| ||  ||||||||||||||| ||||| |||     
T  10748872 gtttttgagattacatatttcttgtggaatctctccctttaagttgttatatgtaaccgcaatccctattaaggatgaaagattccctatgaatgaagga 10748971  T
Q  162 actcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaatttcaattggtatttttccaatcaaattgttccctctca 261  Q
    | ||  ||||| |||  |||||    |||| | | | ||| ||||||||  | ||| |||||||||||||||||||| ||||||| ||||||||||| ||    
T  10748972 aatccaccagttaaattgtttccccaaacatttattagttgaagctttttcaaagagccaatttcaattggtattttgccaatcacattgttccctccca 10749071  T
Q  262 aggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaacgagttattggcgagatagagttcctttaattgtaacaactg 361  Q
        ||||  ||  || ||| | |||| ||||||||||| |||||||||||| | |||||||||||||  |||||  ||||  |  ||||||| |||| |    
T  10749072 catttaagcctttgagattggagcaatatgtcaagtttgaaggaatttctcctgcgaacgagttattgatgagatcaagttgttgcaattgtagcaaccg 10749171  T
Q  362 acccaactcttgggggattt 381  Q
    |||||||||||  |||||||    
T  10749172 acccaactcttctgggattt 10749191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 19607863 - 19607929
Alignment:
Q  203 aagcttttgaagagacccaatttcaattggtatttttccaatcaaattgttccctctcaaggataag 269  Q
    |||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  19607863 aagcttttgaagagaggtgatttcaattgggatttttccaatcaaattgttccctctcaagtataag 19607929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 380
Target Start/End: Complemental strand, 10609905 - 10609744
Alignment:
Q  219 ccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctccagaga 318  Q
    ||||||||||| |||||||| |||||||||||||| |||| |||   ||| | ||  || ||| | |||| ||||| |||||||||||||||||| |  |    
T  10609905 ccaatttcaatcggtattttgccaatcaaattgtttcctcccaaacgtaactctttgagattggagcaatgtgtcaggtttgtaggaatttctcctgcaa 10609806  T
Q  319 acgagttattggcgagatagagttcctttaattgtaacaactgacccaactcttgggggatt 380  Q
    | |||||||||  |||||| ||||  |  ||||||| ||||||||||||||| || ||||||    
T  10609805 aagagttattgatgagataaagttgttgcaattgtagcaactgacccaactcctgcgggatt 10609744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 10718752 - 10718816
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaa 123  Q
    ||||||||||||||||||||||||| |||||||| |||| || || |||||||||| ||| ||||    
T  10718752 caagtttttgagacgacatatttctggtggaataactccgtctaagttgttataaggaaccgaaa 10718816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 19607673 - 19607773
Alignment:
Q  13 aaggaaatgtaccagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatatttcttgtggaatatctccctccaaattgttata 112  Q
    |||||||||||||||||| |||||||   | |||||  ||| ||| |||||||||||| ||||| | |||||  ||||||| ||||||||| ||||||||    
T  19607673 aaggaaatgtaccagataatttgttgtgaaacattattatccctgtcaagtttttgaggcgacaaacttctttcggaatatttccctccaagttgttata 19607772  T
Q  113 a 113  Q
    |    
T  19607773 a 19607773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 9838182 - 9838236
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataa 113  Q
    ||||||||| || |||||||||||| |||||||||||||||| ||||| ||||||    
T  9838182 caagttttttaggcgacatatttctcgtggaatatctccctctaaattattataa 9838236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 10563222 - 10563128
Alignment:
Q  219 ccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctcc 313  Q
    |||||||||||||||||||| |||||||| |||||||||| |||    |||| |   || ||| | |||| ||||||||||||||||||||||||    
T  10563222 ccaatttcaattggtattttcccaatcaatttgttccctcccaaaatcaagtctatgagattggagcaatatgtcaagtttgtaggaatttctcc 10563128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 10764951 - 10764989
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctcc 97  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  10764951 caagtttttgaggcgacatatttcttgtggaatatctcc 10764989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 10610061 - 10609968
Alignment:
Q  63 tttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatg 156  Q
    ||||||||||||||| |||||||||||||||| || || || |||||  ||| |||||||||||   | ||  ||||||||||||||| |||||    
T  10610061 tttttgagacgacatgtttcttgtggaatatccccttctaagttgtttgaagtaactgaaaaacgcgttaagcatgaaagattccctacgaatg 10609968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 399
Target Start/End: Original strand, 10742716 - 10742896
Alignment:
Q  219 ccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctccagaga 318  Q
    |||||||||||||||||||| |||||||| |||||||||  ||| | || |  ||  || ||  | |||| ||||||||||||||||||||| || |  |    
T  10742716 ccaatttcaattggtattttgccaatcaacttgttccctgccaaagttatgactttcagatttgagcaatatgtcaagtttgtaggaatttcacctgcaa 10742815  T
Q  319 acgagttattggcgagatagagttcctttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgt 399  Q
    | |||||||| |  ||| | ||||  |  ||||||| |||||||||||||||||| || |||| || | ||||| ||||||    
T  10742816 aagagttattagtaagaaaaagttgttgcaattgtagcaactgacccaactcttgtggaatttctccatagaatgtgttgt 10742896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 10594113 - 10594067
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctccctccaaat 105  Q
    ||||||||| ||| |||||||||||||||||||||| ||||| ||||    
T  10594113 caagtttttaagatgacatatttcttgtggaatatcaccctctaaat 10594067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 11049886 - 11049980
Alignment:
Q  219 ccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttctcc 313  Q
    ||||||||| ||||||| || ||||| ||||||||||||| |||  | |||| || ||| ||| | |||| ||| | ||||||||||||||||||    
T  11049886 ccaatttcatttggtatcttgccaattaaattgttccctcccaaatacaagtctttaagattggagcaatgtgtgaggtttgtaggaatttctcc 11049980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 12897905 - 12897858
Alignment:
Q  74 acatatttcttgtggaatatctccctccaaattgttataagaaactga 121  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||    
T  12897905 acatatttcttgtggaatatctccctcaaaattgttttcagaaactga 12897858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 12905526 - 12905479
Alignment:
Q  74 acatatttcttgtggaatatctccctccaaattgttataagaaactga 121  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||    
T  12905526 acatatttcttgtggaatatctccctcaaaattgttaccagaaactga 12905479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 12946996 - 12946936
Alignment:
Q  59 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaact 119  Q
    ||||| |||||||  |||||||||||||||||| |||||||| |||||||| | |||||||    
T  12946996 caagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgttttcagaaact 12946936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 12956418 - 12956382
Alignment:
Q  74 acatatttcttgtggaatatctccctccaaattgtta 110  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12956418 acatatttcttgtggaatatctccctcaaaattgtta 12956382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 17925275 - 17925311
Alignment:
Q  74 acatatttcttgtggaatatctccctccaaattgtta 110  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17925275 acatatttcttgtggaatatctccctcaaaattgtta 17925311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 31469166 - 31469264
Alignment:
Q  212 aagagacccaatttcaattggtatttttccaatcaaattgttccctctcaaggataagtattgaaggttgaaacaatttgtcaagtttgtaggaatttc 310  Q
    |||||| |||||||||||||||||| | ||||  | ||||||||||  |||| |||||| || ||| || ||  || ||| ||||||||||||||||||    
T  31469166 aagagagccaatttcaattggtattctgccaacaagattgttcccttgcaagaataagtctttaagattcaacaaacttgacaagtttgtaggaatttc 31469264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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