View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_15 (Length: 408)
Name: NF21430_low_15
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 168 - 390
Target Start/End: Complemental strand, 36915704 - 36915482
Alignment:
| Q |
168 |
cttcaaaatcccaactacctaattaatcactatctgaaaatcttcctttcttccccaaatcaaatgttgttctagcttgttcatcaacaccaccatcaat |
267 |
Q |
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| T |
36915704 |
cttcaaaatcccaactacctaattaatcactatctgaaaatcttcctttcttccccaaatcaaatgttgttctagcttgttcatcaacaccaccatcaat |
36915605 |
T |
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| Q |
268 |
gtcgtcaagttcgagatctgattcttcgttgcttgataatccttttggtaccatcaaattagaattgtcatccatgacatagtcgccaccactatagtta |
367 |
Q |
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| T |
36915604 |
gtcgtcaagatcgagatctgattcttcgttgcttgataatccttttggtaccatcaaattagaattgtcatccatgacatagtcgccaccactatagtta |
36915505 |
T |
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| Q |
368 |
acatcatgagggatgatgtcact |
390 |
Q |
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||||||||||||||||||||||| |
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| T |
36915504 |
acatcatgagggatgatgtcact |
36915482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 36915866 - 36915752
Alignment:
| Q |
13 |
aaaataaacagagaaattaatatatatgccctagaaatcatagacgcatggccacatcaacaagcccaataatcataataccagcaactaatataatcct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36915866 |
aaaataaacagagaaattaatatatatgccctagaaatcatagacgcatggccacatcaacaagcccaataatcataataccagcaactaatataaacct |
36915767 |
T |
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| Q |
113 |
acaatgtacaaacta |
127 |
Q |
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| T |
36915766 |
acaatgtacaaacta |
36915752 |
T |
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