View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21430_low_17 (Length: 366)

Name: NF21430_low_17
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21430_low_17
NF21430_low_17
[»] chr6 (2 HSPs)
chr6 (60-358)||(13146572-13146872)
chr6 (127-171)||(20550026-20550070)
[»] chr7 (3 HSPs)
chr7 (240-356)||(24511156-24511272)
chr7 (288-356)||(24510068-24510136)
chr7 (240-293)||(24509334-24509387)
[»] scaffold0499 (1 HSPs)
scaffold0499 (19-93)||(3266-3340)
[»] chr8 (1 HSPs)
chr8 (243-308)||(19400750-19400814)
[»] chr5 (1 HSPs)
chr5 (240-290)||(15162677-15162727)
[»] chr4 (1 HSPs)
chr4 (273-338)||(46632293-46632358)
[»] chr1 (1 HSPs)
chr1 (179-212)||(23545205-23545238)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 60 - 358
Target Start/End: Complemental strand, 13146872 - 13146572
Alignment:
Q  60 tctattgtttgtgtcttttgtgtatttaaacatcaannnnnnnnnggtgtatgtttaaatatctattttccgctatgttttagccgctatttaacaacac 159  Q
    |||| |||||||||||||||||||||||||||||||         ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  13146872 tctaatgtttgtgtcttttgtgtatttaaacatcaaattttttttggtgtttgtttaatcatctattttccgctatgttttagccgctatttaacaacac 13146773  T
Q  160 tgcttgatgatagcattggtgccctcattgtctctctcttctcaaccctaatttcgtgtgcctct--tattgatcgaatgcttggtttgagtcatggtaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||| |||||||||||||||||||||||||    
T  13146772 tgcttgatgatagcattggtgccctcattgtctctctcttctcaaccctaatttcgtgagtctctcttattgatggaatgcttggtttgagtcatggtaa 13146673  T
Q  258 ttttactttggtttcgttctactttatgatatacttacatattgaatttaatggtgatatagtgtttggacctttgatagccaatggttatgacctatgc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13146672 ttttactttggtttcgttctactttatgatatacttacatattgaatttaaaggtgatatagtgtttggacctttgatagctaatggttatgacctatgc 13146573  T
Q  358 t 358  Q
    |    
T  13146572 t 13146572  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 20550070 - 20550026
Alignment:
Q  127 ttccgctatgttttagccgctatttaacaacactgcttgatgata 171  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||    
T  20550070 ttccgatatgttttagacgctatttaacaacactgcttgatgata 20550026  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 24511272 - 24511156
Alignment:
Q  240 tggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaatggtgatatagtgtttggacctttgatagcc 339  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||     
T  24511272 tggtttgagtcatggtaattttactttggttacgttctactttatgatatacttacatattgaatttaaatgtgatatattgtttgcacctttgatagct 24511173  T
Q  340 aatggttatgacctatg 356  Q
    ||| |||||||||||||    
T  24511172 aatagttatgacctatg 24511156  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 24510068 - 24510136
Alignment:
Q  288 atacttacatattgaatttaatggtgatatagtgtttggacctttgatagccaatggttatgacctatg 356  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  24510068 atacttacatattgaatttaaatgtgatatagtgtttggacctttgatagctaatggttatgacctatg 24510136  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 24509334 - 24509387
Alignment:
Q  240 tggtttgagtcatggtaattttactttggtttcgttctactttatgatatactt 293  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24509334 tggtttgagtcatggtaattttactttggtttcgttccactttatgatatactt 24509387  T

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Target: scaffold0499 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 3340 - 3266
Alignment:
Q  19 ctattgtgatagacatgtgcaaagttggcgaaacctaatcatctattgtttgtgtcttttgtgtatttaaacatc 93  Q
    ||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  3340 ctattgtgatagacatgtgcatagttggtcaaaccgaatcatctattgtttgtgtcttttgtgtatttaaacatc 3266  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 19400750 - 19400814
Alignment:
Q  243 tttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaa 308  Q
    ||||| |||||||| ||||| ||||||||||||||||||||| |||||| || |||||||||||||    
T  19400750 tttgaatcatggta-ttttaatttggtttcgttctactttattatatacataaatattgaatttaa 19400814  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 15162727 - 15162677
Alignment:
Q  240 tggtttgagtcatggtaattttactttggtttcgttctactttatgatata 290  Q
    |||||| | |||||||||||||||||||||||| |||||| ||||||||||    
T  15162727 tggttttaatcatggtaattttactttggtttcattctacattatgatata 15162677  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 46632358 - 46632293
Alignment:
Q  273 gttctactttatgatatacttacatattgaatttaatggtgatatagtg-tttggacctttgatagc 338  Q
    ||||||||||||||||||  |||||||||||||  || ||||||||||| |||||||||||| ||||    
T  46632358 gttctactttatgatatagatacatattgaattatat-gtgatatagtgttttggacctttggtagc 46632293  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 23545238 - 23545205
Alignment:
Q  179 tgccctcattgtctctctcttctcaaccctaatt 212  Q
    ||||||| ||||||||||||||||||||||||||    
T  23545238 tgccctcgttgtctctctcttctcaaccctaatt 23545205  T

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