View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21430_low_19 (Length: 325)

Name: NF21430_low_19
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21430_low_19
NF21430_low_19
[»] chr1 (1 HSPs)
chr1 (14-308)||(48014278-48014572)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 48014572 - 48014278
Alignment:
Q  14 gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatgcattgtggttacattgtgcatccatgatgactcgag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48014572 gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatacattgtggttacattgtgcatccatgatgactcgag 48014473  T
Q  114 catcactgtgcagattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttggt 213  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48014472 catcattgtgcatattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttgat 48014373  T
Q  214 aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcgtaacactcaacaagtgacaacaaatgtatttacaaatt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48014372 aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcttaacactcaacaagtgacaacaaatgtatttacaaatt 48014278  T

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