View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_21 (Length: 301)
Name: NF21430_low_21
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 50 - 291
Target Start/End: Complemental strand, 6020679 - 6020437
Alignment:
| Q |
50 |
aagagactaaagtggattatattacccacaagaaaaagtcattcggcacaagacatattta-tttgtttgaaagaaatagaaacaaatcaatagtttcat |
148 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
6020679 |
aagagattaaagtggattatattacccacaagaaaaagtcatccggcacaagatgtatttactttttttgaaagaaatagaaacaaatcaatagtttcat |
6020580 |
T |
|
| Q |
149 |
ttccaatctcataatggacggaaaaactgtcaagatttttaagcttaggaggcaatttgttttgaattatagctatacagtttgcttcacctttaggttc |
248 |
Q |
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||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
6020579 |
ttccaatctcacaatggacggaaaaactgtcaaaatctttaagctttggaggcaatttattttgaattatagctatacattttgcttcacctttaggttc |
6020480 |
T |
|
| Q |
249 |
ttcacttaatattagatattaaatttaaatacgttgagaataa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6020479 |
ttcacttaatattagatattaaatttaaatacgttgagaataa |
6020437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 6014334 - 6014097
Alignment:
| Q |
53 |
agactaaagtggattatattacccacaagaaaaagtcattcggcacaagacatatttatttgtttgaaagaaatagaaacaaatcaatagtttcatttcc |
152 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||| ||||||||| |
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| T |
6014334 |
agactaaattggattatattacccacaataaaaagtcattcggcacaagacggatttaattttttgaaagaaatagaaacaagccaatagattcatttcc |
6014235 |
T |
|
| Q |
153 |
aatctcataatggacggaaaaactgtcaagatttttaagcttaggaggcaatttgttttgaattatagctatacagtttgcttcacctttaggttcttca |
252 |
Q |
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| T |
6014234 |
agtctcacaaaggacggaataactgtcaggatctttaagctttggaggcaatttgttttcaattatagcgctatatttttcttcaactttaggttcttca |
6014135 |
T |
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| Q |
253 |
cttaatattagatattaaatttaaatacgttgagaata |
290 |
Q |
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| T |
6014134 |
tttaatattagatattaaatttaaaaacaatgagaata |
6014097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 290
Target Start/End: Complemental strand, 6018535 - 6018296
Alignment:
| Q |
50 |
aagagactaaagtggattatattacccacaagaaaaagtcattcggcacaagacatatttatttgtttgaaagaaatagaaacaaatcaatagtttcatt |
149 |
Q |
| |
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|||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||| |||||| |
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| T |
6018535 |
aagaaactaaaatggattatattacc-acaagaaaaagtcattcggcacaagatgaatttaattttttgaaagaaatagaaacaaaccaatagattcatt |
6018437 |
T |
|
| Q |
150 |
tccaatctcataatggacggaaaaactgtcaagatttttaagcttaggaggcaatttgttttgaattatagctatacagtttgcttcacctttaggttct |
249 |
Q |
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| T |
6018436 |
tccagtctcacaaaggacagaataactgtcaggaactttaagctttggaggcaatttgttttcaattatatagctacattttgcttcaactttaggttct |
6018337 |
T |
|
| Q |
250 |
tcacttaatattagatattaaatttaaatacgttgagaata |
290 |
Q |
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||| |||||||||||||||||||||||| || |||||||| |
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| T |
6018336 |
tcatttaatattagatattaaatttaaaaacaatgagaata |
6018296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 6003772 - 6003743
Alignment:
| Q |
50 |
aagagactaaagtggattatattacccaca |
79 |
Q |
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| T |
6003772 |
aagagactaaagtggattatattacccaca |
6003743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 23395064 - 23395007
Alignment:
| Q |
233 |
cttcacctttaggttcttcacttaatattagatattaaatttaaatacgttgagaata |
290 |
Q |
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| T |
23395064 |
cttcacttttcggttcttcatttaatattagatatcaaatttaaaaacgatgagaata |
23395007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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