View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_24 (Length: 295)
Name: NF21430_low_24
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 28429510 - 28429241
Alignment:
| Q |
16 |
tgtttaacagtacttaattagtttcgttnnnnnnnntgtagataatggaatatgttattattatttgagaaagaagaaacataacatacccaggcactac |
115 |
Q |
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| T |
28429510 |
tgtttaacagtacttaattagttccgttaaaaaaaatgtagataatggaatatgttattattatttgagaaagaagaaacataacatacccaggcactac |
28429411 |
T |
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| Q |
116 |
ggggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagtt |
215 |
Q |
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| T |
28429410 |
ggggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaatagcactttgaatcttacatctttctctccagtt |
28429311 |
T |
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| Q |
216 |
tccctgcacgtacatgattcaatttaacaaatataatgccaattaaattaatatctatatttcatctcat |
285 |
Q |
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| T |
28429310 |
tccctgcacgtacatgattcaatttaataaatataatgccaattaaattaatatctatattacatatcat |
28429241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 13373629 - 13373733
Alignment:
| Q |
117 |
gggtaaacagaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagttt |
216 |
Q |
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||||||| |||| ||||||| || ||||||| |||||| ||||| || |||||||||||||| |||| ||||||||| |||||||| ||||| |||| |
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| T |
13373629 |
gggtaaatagaactaccccactcgttcttcagcatgtggagatccgaatgacatataccacaatatagtactttgaatgccacatctttttctcccgttt |
13373728 |
T |
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| Q |
217 |
ccctg |
221 |
Q |
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||||| |
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| T |
13373729 |
ccctg |
13373733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 13426947 - 13427041
Alignment:
| Q |
126 |
gaattaccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagtttccct |
220 |
Q |
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| T |
13426947 |
gaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccct |
13427041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 13447568 - 13447657
Alignment:
| Q |
132 |
ccccattcattcttcaacatgtgaagatctgagtgacatataccacagaatagcactttgaatcttacatctttctctccagtttccctg |
221 |
Q |
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| T |
13447568 |
ccccattcattctgcataatgtgaaggtcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccctg |
13447657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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