View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_28 (Length: 286)
Name: NF21430_low_28
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 38025340 - 38025116
Alignment:
| Q |
47 |
aatactgatcgggtatgcactgagaaacaaagatgtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttat |
146 |
Q |
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| T |
38025340 |
aatactgatcgggtatgcactgagaaacaaagatatgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagtttat |
38025241 |
T |
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| Q |
147 |
ctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
246 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
38025240 |
ctaatctaacatcactatgtaatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtccttagagactcctctg |
38025141 |
T |
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| Q |
247 |
cctgtttggccttcttgtcatcctt |
271 |
Q |
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| T |
38025140 |
cttgtttggacttcttctcatcctt |
38025116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 38032064 - 38031856
Alignment:
| Q |
47 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatattgccgtttgatattacaaactttacatagttt |
144 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| || |
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| T |
38032064 |
aatactgatcgggtatgcactgagaaacatagatatgtgaagaataaactttcctcattgaataatattgccgtttaagattacaaaatttacataatta |
38031965 |
T |
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| Q |
145 |
atctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
244 |
Q |
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| T |
38031964 |
atataatctaacatcac------------------tatgtataagttaatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
38031883 |
T |
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| Q |
245 |
tgcctgtttggccttcttgtcatcctt |
271 |
Q |
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| T |
38031882 |
tgcctgtttggccttcttctcatcctt |
38031856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 38003819 - 38003605
Alignment:
| Q |
47 |
aatactgatcgggtatgcactgagaaacaaagat--gtgaagaataaactttcctcattgaataatatt------gccgtttgatattacaaactttaca |
138 |
Q |
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||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
38003819 |
aatactgatcgggtatgcactttgaaacatagatatgtgaagaataaactttcctcattgaataataatagtactgtagtttgatattacaaactttaca |
38003720 |
T |
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| Q |
139 |
tagtttatctaatctaacatcactatataatataataattatatttacaaattaatcaattaggaccccagcagctcaagtacatgacagtcctcaaaga |
238 |
Q |
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|| | ||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
38003719 |
taaataatctaatctaatatcactatgta------------------caaattaatcaattgggaccccaacagctcaagtacatgacagtcctcaaaga |
38003638 |
T |
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| Q |
239 |
ctcctctgcctgtttggccttcttgtcatcctt |
271 |
Q |
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||||||||||||||| |||||||| |||||||| |
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| T |
38003637 |
ctcctctgcctgttttgccttcttctcatcctt |
38003605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 2912525 - 2912477
Alignment:
| Q |
193 |
atcaattaggaccccagcagctcaagtacatgacagtcctcaaagactc |
241 |
Q |
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||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
2912525 |
atcaatttggaccccagcagctcaagtacatgacagtcctaagagactc |
2912477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 38022110 - 38022056
Alignment:
| Q |
201 |
ggaccccagcagctcaagtacatgacagtcctcaaagactcctctgcctgtttgg |
255 |
Q |
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||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| |
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| T |
38022110 |
ggaccccagcaactcaagaacatgacagttctcaaagattcctctgactgcttgg |
38022056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 38045148 - 38045095
Alignment:
| Q |
191 |
taatcaattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
244 |
Q |
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|||| |||| ||||||||||| |||||||||||||| |||||||||| ||||| |
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| T |
38045148 |
taattaattgggaccccagcaactcaagtacatgaccttcctcaaagattcctc |
38045095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 38069158 - 38069110
Alignment:
| Q |
198 |
ttaggaccccagcagctcaagtacatgacagtcctcaaagactcctctg |
246 |
Q |
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||||||||||| ||||| ||||||||||| || |||||||| ||||||| |
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| T |
38069158 |
ttaggaccccaacagcttaagtacatgactgttctcaaagattcctctg |
38069110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 16005531 - 16005483
Alignment:
| Q |
196 |
aattaggaccccagcagctcaagtacatgacagtcctcaaagactcctc |
244 |
Q |
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|||| |||||||| ||||| ||||||||||| |||||||| |||||||| |
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| T |
16005531 |
aattgggaccccaacagcttaagtacatgaccgtcctcaatgactcctc |
16005483 |
T |
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