View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_32 (Length: 249)
Name: NF21430_low_32
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 43315491 - 43315676
Alignment:
| Q |
47 |
ggggtagtaatgacttatattctcataagcgtttgagaatgttgaacctagtcatacaagaggaattatcgatttctcggcgagcgatacaagcaaataa |
146 |
Q |
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| T |
43315491 |
ggggtagtaatgacttatattctcataattgtttgagaacgttgaacctagtcatacaagaggaattatcgatttctcggcaagcgatacaagcaaataa |
43315590 |
T |
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| Q |
147 |
ta-tatatcattttgggtaaaaagacgaacttaatcaaggatatctaacttgtgtttgactcaagatcaaaggaactgaaaagaat |
231 |
Q |
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| T |
43315591 |
tattatatcattttggataaaaagacgaacttaatcaaggatatctaacttgtgtttgactcaagatcaaaggaaccgaaaagaat |
43315676 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 40216565 - 40216620
Alignment:
| Q |
58 |
gacttatattctcataagcgtttgagaatgttgaacctagtcatacaagaggaatt |
113 |
Q |
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| T |
40216565 |
gacttatattctcaaaagtgtttgagaaggttaaatctagtcatacaagaggaatt |
40216620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 25029493 - 25029548
Alignment:
| Q |
58 |
gacttatattctcataagcgtttgagaatgttgaacctagtcatacaagaggaatt |
113 |
Q |
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| T |
25029493 |
gacttatattctcacgagaatttgagaacgttaaacctagtcatacaagaggaatt |
25029548 |
T |
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