View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_5 (Length: 523)
Name: NF21430_low_5
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Complemental strand, 32096359 - 32095848
Alignment:
| Q |
7 |
gttgagggagttgaggattgaggttattggagttcaatcttcgcttaataatggtgtttttgttgcggagttgagggctaaggtgaaggaaaatggtgga |
106 |
Q |
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| T |
32096359 |
gttgagggagttgaggattgaggttattggagttcaatcttcgcttaataatggtgtttttgttgcggagttgagggctaaggtgaaggaaaatggtgga |
32096260 |
T |
|
| Q |
107 |
aatgggaagaaagttagtattgttgaagttaagagagcacttaaccaaattatacctcacaacatttagtgcatgattgaaattgacgatgagtttgata |
206 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096259 |
aatgggaagaaagttagtattgtggaagttaagagagcacttaaccaaattatacctcacaacatttagtgcatgattgaaattgacgatgagtttgata |
32096160 |
T |
|
| Q |
207 |
aaatcacagtgatatcgtgattttcttaaagttttaaagagtgatttttgacaaaacaatagtggtatagtgtgattctgtcaaacttattgttaatcca |
306 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32096159 |
aaatcacagtgatatcgtaatttttttaaagttttaaagagtaatttttggcaaaacaatagtggtacagtgtgattctgtcaaacttattgttaatcca |
32096060 |
T |
|
| Q |
307 |
aatatatatttggatcaacggtgactttgccaaaaccagaatgattatgtcaatctcactgtaaatctaaacaggtaattattgtgattttggcatc--- |
403 |
Q |
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||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
32096059 |
aatatatgtttgaatcaacggtgaatttgccaaaatcagaatgattatgtcaatctcactgtgaatctaaacaggtaatgattatgattttggcatctcg |
32095960 |
T |
|
| Q |
404 |
--tacattggcttaatatgtacatatatatcatctcaagccatgaccctaggaagtgaagtctagtagtaattaataaacaacatttggaagatatggat |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095959 |
tatacattggcttaatatgtacatatatatcatctcaagccatgaccctaggaagtgaagtctagtagtaattaataaacaacatttggaagatatggat |
32095860 |
T |
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| Q |
502 |
tctagatcatct |
513 |
Q |
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|||| ||||||| |
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| T |
32095859 |
tctatatcatct |
32095848 |
T |
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