View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_8 (Length: 488)
Name: NF21430_low_8
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 6083216 - 6083682
Alignment:
| Q |
17 |
aggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatct |
116 |
Q |
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| T |
6083216 |
aggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatct |
6083315 |
T |
|
| Q |
117 |
taacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagag |
216 |
Q |
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| T |
6083316 |
taacaaatctattatcgcgaaagacaatttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagag |
6083415 |
T |
|
| Q |
217 |
tctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgcttt |
316 |
Q |
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| T |
6083416 |
tctgttgagaaggataatacttctctgatgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgcttt |
6083515 |
T |
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| Q |
317 |
cgcaaacagcgtcaaaactgttgcaacttgaatctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagtt |
416 |
Q |
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| T |
6083516 |
cgcaaacagcgtcaaaactgttgcaacttgagtctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagtt |
6083615 |
T |
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| Q |
417 |
atctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtggggagtcctttgcttct |
483 |
Q |
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| T |
6083616 |
atctttggcatcaatgtcttacattggcagtgatgacaatgttagctgcggggagtccttggcttct |
6083682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 39108062 - 39107915
Alignment:
| Q |
145 |
ttgattgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctga |
244 |
Q |
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|||||||| ||||||| ||||||||||| |||||| || | |||| || |||| ||||| || |||||||||| |||||| |||||| ||||||||| |
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| T |
39108062 |
ttgattgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggttagattagagtccactgagaaagataatgcttctctga |
39107963 |
T |
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| Q |
245 |
tgtatgaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
292 |
Q |
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| T |
39107962 |
catatgaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
418 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
466 |
Q |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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