View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21430_low_9 (Length: 476)
Name: NF21430_low_9
Description: NF21430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21430_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 21434979 - 21434532
Alignment:
| Q |
10 |
aagaatatgaatgtgatagagtaaatgcattatgatctagtagagtattttgtagttttatttctatgttttgaaaatcaaatataatcacttatacaat |
109 |
Q |
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| T |
21434979 |
aagaatatgaatgtgagagagtaaatgcattatgatctagtagagtattttgtagttttatttctatgttttgaaaatcaaatataatcacttatacaat |
21434880 |
T |
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| Q |
110 |
catgcgaatttggtaattcagtattagaataagaccctcaagatatttgctagagatatggtctagataaagcttataaagattagacagttttttgttt |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21434879 |
catgcgaatttggtaatttagtattagaataagaccctcaagatatttgctagagatatgg--tagataaagcttataaagattagacagttttttgttt |
21434782 |
T |
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| Q |
210 |
tatgggatatagatccaaaatgtaaaatgatattaaagtttaacttggatatattatttagctgcacatattataaaacttagtgaggaacccttaccnn |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434781 |
tatgggatataggtccaaaatgtaaaatgatattaaagtttaacttggatatattatttagctgcacatattataaaacttagtgaggaacccttacctt |
21434682 |
T |
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| Q |
310 |
nnnnnnnnaacaaattcacattgcattaatttaacatccattaatttgacataacatgtcaattcatcaatttcatatgcaattaggactttaacaatta |
409 |
Q |
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| T |
21434681 |
ttttttttaacaaattcacattgcattaatttaacatccattaatttgacataacatgtcaattcatcaatttcatatgcaattaggactttaacaatta |
21434582 |
T |
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| Q |
410 |
catgctaaaattataaaacttaatgtgatgaaagtagaagatgacttttt |
459 |
Q |
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| T |
21434581 |
catgctaaaattataaaacttaatgtgatgaaagtagaagatgacttttt |
21434532 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 11467508 - 11467565
Alignment:
| Q |
348 |
cattaatttgacataacatgtcaattcatcaatttcatatgcaattaggactttaacaa |
406 |
Q |
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| T |
11467508 |
cattaatttgacata-catgttaattcatcaatttcatatgcaattaggagattaacaa |
11467565 |
T |
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