View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21431_high_2 (Length: 401)

Name: NF21431_high_2
Description: NF21431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21431_high_2
NF21431_high_2
[»] chr1 (4 HSPs)
chr1 (20-283)||(51983373-51983629)
chr1 (2-120)||(48638840-48638958)
chr1 (6-149)||(51977626-51977757)
chr1 (334-385)||(51983280-51983331)
[»] chr4 (5 HSPs)
chr4 (2-160)||(18475025-18475181)
chr4 (2-120)||(21697958-21698076)
chr4 (2-120)||(18480967-18481085)
chr4 (2-120)||(32752741-32752859)
chr4 (28-102)||(26416841-26416915)
[»] chr3 (5 HSPs)
chr3 (2-160)||(7450814-7450970)
chr3 (2-120)||(36839870-36839986)
chr3 (2-120)||(7458956-7459074)
chr3 (2-160)||(36835843-36835997)
chr3 (2-102)||(7649467-7649569)
[»] chr5 (4 HSPs)
chr5 (2-120)||(19154081-19154199)
chr5 (2-120)||(19159986-19160104)
chr5 (2-120)||(4253099-4253217)
chr5 (2-99)||(11576497-11576592)
[»] scaffold0067 (1 HSPs)
scaffold0067 (2-98)||(42222-42316)
[»] scaffold0248 (1 HSPs)
scaffold0248 (2-120)||(19985-20103)
[»] chr7 (1 HSPs)
chr7 (1-97)||(9937325-9937421)
[»] chr8 (2 HSPs)
chr8 (55-139)||(35158745-35158828)
chr8 (3-37)||(35159205-35159239)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 51983629 - 51983373
Alignment:
Q  20 gaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgttgcataagcaattatttct 119  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||  |||||||||||||||  || ||||  ||||||||||    
T  51983629 gaaggtttagaagagcctcaacttcttcaagcagaagcaatggcaggaggtatgccttgatc--ctaatttaagtttccactgtataaataattatttct 51983532  T
Q  120 tctatggttttaaagaaataactcacatgtggtatcagagctattgaaaacctctgccttgcttttcgtgttctgattttgagttcttgcttgaatctga 219  Q
    |||||||||||||||||||||||||||||||     | |||  |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  51983531 tctatggttttaaagaaataactcacatgtg-----atagcctttgaaaacctctgccttgcttttcgtgttcggatttttagtttttgcttgaatctga 51983437  T
Q  220 taattctcaatttcatattggagcgctggtaatacaccgaaacgttgagctcataaagaaaaac 283  Q
    ||||| ||||||||||||| ||||| |    |||||||||||| ||||||||||||||||||||    
T  51983436 taattttcaatttcatattagagcgatttagatacaccgaaacattgagctcataaagaaaaac 51983373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 48638840 - 48638958
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  48638840 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatcctttaatttaagtttccgct 48638939  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  48638940 gtttaagtagttatttctt 48638958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 51977757 - 51977626
Alignment:
Q  6 aaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgttgcat 105  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||| |||||||||   |||||||||         |    
T  51977757 aaagtgagattgtggaaggtttagaagaacctcaacttctttaagcaggagcaatagctggaggtatgtcttgatcct---atttaagtt---------t 51977670  T
Q  106 aagcaattatttcttctatggttttaaagaaataactcacatgt 149  Q
    ||| |||||||||||||||||||||||| |||||||||||||||    
T  51977669 aagtaattatttcttctatggttttaaaaaaataactcacatgt 51977626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 51983331 - 51983280
Alignment:
Q  334 ggtgttaaaatgattatgaaatcgaaatttgttaaaatcgggtctgctatgt 385  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  51983331 ggtgttaaaatgattatgaaatcgaaatttgttaaaactgagtctgctatgt 51983280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 18475025 - 18475181
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |    
T  18475025 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaagcaggagcaatggttggaggtatgccttgatcctttaatttaagtttccgct 18475124  T
Q  102 gcataagcaattatttcttctatggttttaaagaaataactcacatgtggtatcagagc 160  Q
    |  |||| | ||||||||  | || | || | ||||||||| |||||||||||||||||    
T  18475125 gtttaagtagttatttct--tttgttctttatgaaataacttacatgtggtatcagagc 18475181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 21697958 - 21698076
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| |    
T  21697958 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaagcaggagcaatggctgaaggtatgccttgatcctttaatttaagtttccgct 21698057  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||||| |||||||||    
T  21698058 gtttaagcagttatttctt 21698076  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 18480967 - 18481085
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||| |    
T  18480967 catcaaagtgagattgtggaaggtttagaaaagcctcaacttcttcaagcaggagcaatggttggaggtatgccttaatcctttaatttaagtttccgct 18481066  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  18481067 gtttaagtagttatttctt 18481085  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 32752741 - 32752859
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||| ||||||||||||||| |    
T  32752741 catcaaagtgagattgtaaaaggtttagaagagcctcaacttcttcaagcaggagcaatgactgaaggtatgccttaatcctttaatttaagtttccgct 32752840  T
Q  102 gcataagcaattatttctt 120  Q
    |  ||| || |||||||||    
T  32752841 gtttaaacagttatttctt 32752859  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 26416915 - 26416841
Alignment:
Q  28 agaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgttg 102  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  26416915 agaagagcctcaccatcttcaaacaggaacaatggttggaggtatgccttgatcctttaatttaagtttccgttg 26416841  T

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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 7450814 - 7450970
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  7450814 catcaaagtgagattgtgaaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatcctttaatttaagtttccgct 7450913  T
Q  102 gcataagcaattatttcttctatggtttta-aagaaataactcacatgtggtatcagagc 160  Q
    |  |||| | |||||||||   | ||| || | ||||||||| |||||||||||||||||    
T  7450914 gtttaagtagttatttctt---ttgttctatatgaaataacttacatgtggtatcagagc 7450970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 36839870 - 36839986
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |    
T  36839870 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatc--ctaatttaagtttccgct 36839967  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  36839968 gtttaagtagttatttctt 36839986  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 7458956 - 7459074
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |    
T  7458956 catcaaagtgagattgtgaaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatcctttaatttaaatttccgct 7459055  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  7459056 gtttaagtagttatttctt 7459074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 36835843 - 36835997
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||| |    
T  36835843 catcaaagtgagattgtggaaggtttagaagagactcaacttcttcaagcaggagcaatggctggaggtatgccttgatc--ctaatttaagtttccgct 36835940  T
Q  102 gcataagcaattatttcttctatggttttaaagaaataactcacatgtggtatcagagc 160  Q
    |  |||| | ||||||||  | || | || | ||||||||| |||| ||||||||||||    
T  36835941 gtttaagtagttatttct--tttgttatttatgaaataacttacatttggtatcagagc 36835997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 7649467 - 7649569
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaactt--cttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||||||  ||||||||||| |||||||||||||||||| | |||||||||||||||    
T  7649467 catcaaagtgaaattgtggaaggtttagaagagcctcaacttttcttcaagtaggagcaatggttggaggtatgccttgatcgtttaatttaagtttccg 7649566  T
Q  100 ttg 102  Q
    |||    
T  7649567 ttg 7649569  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 19154199 - 19154081
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  19154199 catcaaagtgagattgtgaaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatcctttaatttaagtttccgct 19154100  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  19154099 gtttaagtagttatttctt 19154081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 19160104 - 19159986
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  19160104 catcaaagtgagattgtgaaaggtttagaagagcctcaacttcttcaagcaggagcaatggctggaggtatgccttgatcctttaatttaagtttccgct 19160005  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  19160004 gtttaagtagttatttctt 19159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 4253217 - 4253099
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||| ||||||||    
T  4253217 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaagcaggagtagtggctggaggtatgccttgatcctttaatttaaatttccgtt 4253118  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  4253117 gtttaagtagttatttctt 4253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 11576497 - 11576592
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccg 99  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||  |||||||| ||| ||||| |||||||||||||||    
T  11576497 catcaaagtgagattgtgaaagctttagaagagcctcaacttcttcaagcaggagcaatggc--gaggtatgtcttaatcctttaatttaagtttccg 11576592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 42222 - 42316
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttcc 98  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||  |||||||||||||||    
T  42222 catcaaagtgagattgtggaaggtttagaagagcctcaactacttcaagcaggagcaatggctggagatatgccttgatc--ctaatttaagtttcc 42316  T

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Target: scaffold0248 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 19985 - 20103
Alignment:
Q  2 catcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttccgtt 101  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| | ||||||||||| ||||| ||||||||||||||| |    
T  19985 catcaaagtgagattgtggaatgtttagaagagcctcaacttcttcaagtaggagcaatggcggaaggtatgccttaatcctttaatttaagtttccgct 20084  T
Q  102 gcataagcaattatttctt 120  Q
    |  |||| | |||||||||    
T  20085 gtttaagtagttatttctt 20103  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 9937325 - 9937421
Alignment:
Q  1 tcatcaaagtgagattgtggaaggtttagaagagcctcaacttcttcaaacaggagcaatggctggaggtatgccttgatcctctaatttaagtttc 97  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| || || |||||| | |||||||| ||| |||||||||    
T  9937325 tcatcaaagtgagattgtggaaggtttagaagagtctcaacatcttcaaacaagagcaacggttgtaggtatactttgatcctttaacttaagtttc 9937421  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 35158828 - 35158745
Alignment:
Q  55 agcaatggctggaggtatgccttgatcctctaatttaagtttccgttgcataagcaattatttcttctatggttttaaagaaata 139  Q
    ||||||||| |||||||||||||  || | |||||||||||||| |||  ||||| || ||||||| ||||||||||||||||||    
T  35158828 agcaatggcgggaggtatgcctttgtcttttaatttaagtttcccttgtttaagc-ataatttcttttatggttttaaagaaata 35158745  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 35159239 - 35159205
Alignment:
Q  3 atcaaagtgagattgtggaaggtttagaagagcct 37  Q
    |||||||||||||||||||||||||| ||||||||    
T  35159239 atcaaagtgagattgtggaaggtttaaaagagcct 35159205  T

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