View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21431_low_1 (Length: 499)

Name: NF21431_low_1
Description: NF21431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21431_low_1
NF21431_low_1
[»] chr4 (8 HSPs)
chr4 (1-359)||(18343719-18344079)
chr4 (20-150)||(36638870-36639000)
chr4 (367-482)||(18343570-18343685)
chr4 (398-447)||(506506-506555)
chr4 (398-447)||(18042075-18042124)
chr4 (397-435)||(18179696-18179734)
chr4 (201-234)||(36639056-36639089)
chr4 (374-482)||(50593542-50593649)
[»] scaffold0002 (4 HSPs)
scaffold0002 (1-324)||(163257-163589)
scaffold0002 (367-482)||(163684-163799)
scaffold0002 (396-438)||(190645-190687)
scaffold0002 (324-359)||(163610-163645)
[»] chr1 (3 HSPs)
chr1 (1-301)||(9857654-9857950)
chr1 (397-435)||(31265991-31266029)
chr1 (398-434)||(49771361-49771397)
[»] chr3 (4 HSPs)
chr3 (386-482)||(54630181-54630277)
chr3 (398-447)||(17223707-17223756)
chr3 (396-437)||(13226970-13227011)
chr3 (102-150)||(31878210-31878258)
[»] chr6 (4 HSPs)
chr6 (367-420)||(31058812-31058865)
chr6 (398-447)||(14543003-14543052)
chr6 (310-359)||(31058724-31058773)
chr6 (397-435)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (398-447)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (398-447)||(6930438-6930487)
chr7 (396-437)||(1399882-1399923)
chr7 (396-437)||(18961072-18961112)
chr7 (396-437)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (398-447)||(19153780-19153829)
[»] scaffold1779 (1 HSPs)
scaffold1779 (392-482)||(48-138)
[»] scaffold0625 (1 HSPs)
scaffold0625 (396-437)||(8623-8664)
[»] chr2 (1 HSPs)
chr2 (399-447)||(17442387-17442435)
[»] scaffold0330 (2 HSPs)
scaffold0330 (278-324)||(13433-13479)
scaffold0330 (324-359)||(13377-13412)
[»] scaffold0477 (1 HSPs)
scaffold0477 (397-435)||(8693-8731)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 18344079 - 18343719
Alignment:
Q  1 ttatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacatta 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344079 ttatattaaatttcataatcttactgattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacatta 18343980  T
Q  101 catcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataat--nnnnnnnnnng 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||            |    
T  18343979 catcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtggatttttttgaatttagaaatttttgccaatatgataataaaaaaaaaaaag 18343880  T
Q  199 agaaatatggattcgttagaaccttatatcaaaacatcattatctagttagatatggatagcaaaaaaggtctataagattccatatttggttctatata 298  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||     
T  18343879 acaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataagaatccatatttggttctatatc 18343780  T
Q  299 aaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343779 aaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 36638870 - 36639000
Alignment:
Q  20 cttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga 119  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36638870 cttactaattcattagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacattacatcttaaatttataatga 36638969  T
Q  120 aagagtaaatattcgcccgcgaaaatgtgga 150  Q
    |||||| ||||||||||||||||||||||||    
T  36638970 aagagtgaatattcgcccgcgaaaatgtgga 36639000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 367 - 482
Target Start/End: Complemental strand, 18343685 - 18343570
Alignment:
Q  367 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 18343586  T
Q  467 actataaccccaaaag 482  Q
    ||||||||||||||||    
T  18343585 actataaccccaaaag 18343570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 506506 - 506555
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 18042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
Q  397 gaggagccgtatgaggtgaaaatctcatgtacggttctg 435  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttctg 18179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 36639056 - 36639089
Alignment:
Q  201 aaatatggattcgttagaaccttatatcaaaaca 234  Q
    |||||||||||||||||||| |||||||||||||    
T  36639056 aaatatggattcgttagaacattatatcaaaaca 36639089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 482
Target Start/End: Original strand, 50593542 - 50593649
Alignment:
Q  374 tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa 473  Q
    |||||||  |||||||||| | ||| ||||||| ||||  |||||||| | || | ||| |||||||||||| ||||||| ||| |||||  ||||||||    
T  50593542 tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa 50593640  T
Q  474 ccccaaaag 482  Q
    |||| ||||    
T  50593641 cccccaaag 50593649  T

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Target: scaffold0002 (Bit Score: 183; Significance: 9e-99; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 163257 - 163589
Alignment:
Q  1 ttatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacatta 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  163257 ttatattaaatttcataatcttactgattcattagatgggatggtggacggaactaagaattcattattttttgaggagttgtggactaatccaacatca 163356  T
Q  101 catcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtgga-nnnnnnngaatttagaaatttttgcca----atatgataat---nnnn 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||    ||||||||||           
T  163357 catcttaaatttataatgaaagagtaaaatattcgcccgcgaaaatgtggatttttttttaatttagaaatttttgccaatatatatgataataaaaaaa 163456  T
Q  192 nnnnnngagaaatatggattcgttagaaccttatatcaaaacatcattatctagttagatatggatagcaaaaaaggtctataagattccatatttggtt 291  Q
          || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  163457 aaaaaagacaaatatggattcgttagaaccttatatcaaaacaacattatctagttagatatggatagcaaaaatggtctataaaaatccatatttggtt 163556  T
Q  292 ctatataaaagcaagatatacaaatttctaata 324  Q
     |||||  |||||||||||||||||||||||||    
T  163557 ttatatccaagcaagatatacaaatttctaata 163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 367 - 482
Target Start/End: Original strand, 163684 - 163799
Alignment:
Q  367 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca 163783  T
Q  467 actataaccccaaaag 482  Q
    ||||||||||||||||    
T  163784 actataaccccaaaag 163799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 190645 - 190687
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 438  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  324 atgtcaaaaaatcccgcgattgtattctattttaaa 359  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 9857654 - 9857950
Alignment:
Q  1 ttatattaaatttcataatcttactgattcgttagatgggatggcggacggaactaagaattcattattttttgaggagttgtggactaacccaacatta 100  Q
    ||||||||||||| ||||||||| |||||| |||||| |||||| ||||  |||||||||||||||||||||||||||||||||| |||| |  ||||||    
T  9857654 ttatattaaatttaataatcttattgattcattagattggatggtggacaaaactaagaattcattattttttgaggagttgtgggctaatctgacatta 9857753  T
Q  101 catcttaaatttataatgaaagagt-aaatattcgcccgcgaaaatgtggannnnnnngaatttagaaatttttgccaatatgataatnnnnnnnnnnga 199  Q
    ||||||||||||||||||||||||| |||||||| |  | |||||||||||       ||||||| |||||||||||||||||||  |          ||    
T  9857754 catcttaaatttataatgaaagagtaaaatattcacatgtgaaaatgtggatttttttgaatttataaatttttgccaatatgat--taaaaaaaaaaga 9857851  T
Q  200 gaaatatggattcgttagaaccttatatcaaaacatcattatctagttagatatggatagcaaaaaaggtctataagattccatatttggttctatataa 299  Q
     |||||||||||  |||||||||  |||||||||| ||||||||||||||| || ||||||||||| |||||||| || ||||||||| |||||||||||    
T  9857852 caaatatggattttttagaacct--tatcaaaacaacattatctagttagacat-gatagcaaaaatggtctatacgaatccatatttcgttctatataa 9857948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
Q  397 gaggagccgtatgaggtgaaaatctcatgtacggttctg 435  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttctg 31265991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttct 434  Q
    |||||||||||||||||||||||| |||||| |||||    
T  49771397 aggagccgtatgaggtgaaaatcttatgtacagttct 49771361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 386 - 482
Target Start/End: Complemental strand, 54630277 - 54630181
Alignment:
Q  386 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaag 482  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaag 54630181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 17223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 13227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 31878210 - 31878258
Alignment:
Q  102 atcttaaatttataatgaaagagtaaatattcgcccgcgaaaatgtgga 150  Q
    |||||||||||||||| ||||||||| ||||||  ||| ||||||||||    
T  31878210 atcttaaatttataattaaagagtaattattcggtcgcaaaaatgtgga 31878258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  367 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 14543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  310 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
Q  397 gaggagccgtatgaggtgaaaatctcatgtacggttctg 435  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttctg 4639423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg 265168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg 6930487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 437  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta 1399923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 437  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18961112  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 437  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18993073  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
Q  398 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg 19153780  T

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Target: scaffold1779 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 482
Target Start/End: Original strand, 48 - 138
Alignment:
Q  392 ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaag 482  Q
    |||||||||||| | |||||  |||| |||||||| | |||||||| ||||||||||||| | ||| || |||||||||||||||||||||    
T  48 ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaag 138  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 437
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
Q  396 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 8623  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
Q  399 ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 447  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg 17442387  T

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Target: scaffold0330 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 13479 - 13433
Alignment:
Q  278 ttccatatttggttctatataaaagcaagatatacaaatttctaata 324  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||    
T  13479 ttccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  324 atgtcaaaaaatcccgcgattgtattctattttaaa 359  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
Q  397 gaggagccgtatgaggtgaaaatctcatgtacggttctg 435  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttctg 8693  T

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