View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21432_low_1 (Length: 501)
Name: NF21432_low_1
Description: NF21432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21432_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 103 - 482
Target Start/End: Complemental strand, 4770713 - 4770334
Alignment:
| Q |
103 |
ttattaatggtgctgatgatattcttatagatggacaaagcaactttactagccgaggttatcaggcaagtgaagcatttgnnnnnnnntgcagatgaag |
202 |
Q |
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| T |
4770713 |
ttattaatgttgctgatgatattcttatagatggacaaagcaactttactagctgaggttattaggcaagtgaagcatttgaaaaaaaatgcagatgaag |
4770614 |
T |
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| Q |
203 |
caagcaaaggttattcaatcccaacagatgacgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcga |
302 |
Q |
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| T |
4770613 |
caagcaaaggttattcaattccaacagacgatgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcga |
4770514 |
T |
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| Q |
303 |
ttatcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaag |
402 |
Q |
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| T |
4770513 |
ttatcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaag |
4770414 |
T |
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| Q |
403 |
aatgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatca |
482 |
Q |
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| T |
4770413 |
aatgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatca |
4770334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 4770751 - 4770840
Alignment:
| Q |
20 |
cgaaatggacatcgtaaatgacacatagacatcactaggtcgtatatcctgtcttattaaatgtattgtttttgttttaaggattattaa |
109 |
Q |
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| T |
4770751 |
cgaaatggacatcataaataacacatagacatcactaggtcgtatatcctgtcttattaaatgtattgtttttgttttaaggattattaa |
4770840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 34480196 - 34480257
Alignment:
| Q |
199 |
gaagcaagcaaaggttattcaatcccaacagatgacgatgaagtgaaagttgaaccatatga |
260 |
Q |
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| T |
34480196 |
gaagcaagcaaaggttttctcattccaacagaagttgatgaagtgaaagttgaaccatatga |
34480257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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